Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3612 | 3' | -62.6 | NC_001650.1 | + | 162765 | 0.66 | 0.620927 |
Target: 5'- uCCCUuuuAGaCCAGGCCCgGggCCUGggcUGCAg -3' miRNA: 3'- -GGGG---UC-GGUCCGGGaCgaGGAC---ACGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 27684 | 0.66 | 0.611161 |
Target: 5'- gCCCCGGUUGGaGgCCUGCUUCUGgacccggGCc -3' miRNA: 3'- -GGGGUCGGUC-CgGGACGAGGACa------CGu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 156205 | 0.66 | 0.611161 |
Target: 5'- gCCCGGCCAGGgCCauCUCCgc-GCAg -3' miRNA: 3'- gGGGUCGGUCCgGGacGAGGacaCGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 131576 | 0.67 | 0.601408 |
Target: 5'- aCCCCgaGGCCgAGGUCCUGC-CC-GUGa- -3' miRNA: 3'- -GGGG--UCGG-UCCGGGACGaGGaCACgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 133645 | 0.67 | 0.601408 |
Target: 5'- gCCCCguuucacaacagAGCCAGGCCCcucCUCCUcccggGCGa -3' miRNA: 3'- -GGGG------------UCGGUCCGGGac-GAGGAca---CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 108752 | 0.67 | 0.601408 |
Target: 5'- cCCCCAGCCgcggcgggAGGCCCcGcCUCUauUGCc -3' miRNA: 3'- -GGGGUCGG--------UCCGGGaC-GAGGacACGu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 131930 | 0.67 | 0.581972 |
Target: 5'- uUCCuGCUguGGGCCCUGCUCacgGUGg- -3' miRNA: 3'- gGGGuCGG--UCCGGGACGAGga-CACgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 60001 | 0.67 | 0.572301 |
Target: 5'- gCCCCGaUCAGGCCCUGCacgucCCUGa--- -3' miRNA: 3'- -GGGGUcGGUCCGGGACGa----GGACacgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 122433 | 0.67 | 0.572301 |
Target: 5'- cCCCCGGCCucGGGCaCCaGCUCCcucgccGCGg -3' miRNA: 3'- -GGGGUCGG--UCCG-GGaCGAGGaca---CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 26721 | 0.67 | 0.572301 |
Target: 5'- gCCCAucuucGCCGGGCCCgGCcuggaggggCUGUGCGc -3' miRNA: 3'- gGGGU-----CGGUCCGGGaCGag-------GACACGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 98492 | 0.67 | 0.572301 |
Target: 5'- aCCCAGCCucAGGCgCCUcGCga-UGUGCu -3' miRNA: 3'- gGGGUCGG--UCCG-GGA-CGaggACACGu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 61242 | 0.67 | 0.571336 |
Target: 5'- uCCCCGGCCacguggaGGGCgguggCCUGCUCCaGccGCGc -3' miRNA: 3'- -GGGGUCGG-------UCCG-----GGACGAGGaCa-CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 155498 | 0.67 | 0.562668 |
Target: 5'- uCCCCAGCUccccgAGGCCCagggagaaggUGCccgUCCUGUuCAg -3' miRNA: 3'- -GGGGUCGG-----UCCGGG----------ACG---AGGACAcGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 6130 | 0.67 | 0.562668 |
Target: 5'- aCCCCauGGCCaaugaAGGCCCUgGUUgCUGgGCAg -3' miRNA: 3'- -GGGG--UCGG-----UCCGGGA-CGAgGACaCGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 172837 | 0.67 | 0.562668 |
Target: 5'- aCCCCauGGCCaaugaAGGCCCUgGUUgCUGgGCAg -3' miRNA: 3'- -GGGG--UCGG-----UCCGGGA-CGAgGACaCGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 144149 | 0.67 | 0.553079 |
Target: 5'- gCCCCAGaggggacagcaCCAGGCaCCUGC-CCgggGCGa -3' miRNA: 3'- -GGGGUC-----------GGUCCG-GGACGaGGacaCGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 108888 | 0.67 | 0.553079 |
Target: 5'- gCCCagcgCGGCCAGGUCCaGCaggCC-GUGCAg -3' miRNA: 3'- -GGG----GUCGGUCCGGGaCGa--GGaCACGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 140259 | 0.68 | 0.54354 |
Target: 5'- gCUCAGCCcGGCCCgggaGCUCCaccgGCGg -3' miRNA: 3'- gGGGUCGGuCCGGGa---CGAGGaca-CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 53338 | 0.68 | 0.515268 |
Target: 5'- aCCCGGCCGGGCaga--UCCUGUGa- -3' miRNA: 3'- gGGGUCGGUCCGggacgAGGACACgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 130690 | 0.68 | 0.496754 |
Target: 5'- --gCAGCaGGGCCUUGaaggUCCUGUGCAg -3' miRNA: 3'- gggGUCGgUCCGGGACg---AGGACACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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