miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3613 3' -55.6 NC_001650.1 + 109088 0.66 0.945069
Target:  5'- -gCGGAgCGACGuGCUGaGCGuCCUGGg -3'
miRNA:   3'- ggGUCUgGCUGUuUGAC-CGC-GGACUu -5'
3613 3' -55.6 NC_001650.1 + 156434 0.67 0.882252
Target:  5'- cCCCGGGCCGuGC-AGCUcgGGCgugaGCCUGGGg -3'
miRNA:   3'- -GGGUCUGGC-UGuUUGA--CCG----CGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 24999 0.67 0.889121
Target:  5'- cCCCGGaguGCCugGACAGGCUGGUgGCCUcGGg -3'
miRNA:   3'- -GGGUC---UGG--CUGUUUGACCG-CGGA-CUu -5'
3613 3' -55.6 NC_001650.1 + 109360 0.67 0.902184
Target:  5'- gCCCGGGCCucccggacGCGGACgGGCcCCUGGAc -3'
miRNA:   3'- -GGGUCUGGc-------UGUUUGaCCGcGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 157618 0.66 0.918348
Target:  5'- aCCCAGAUgGGCAuGugUGGaagcgaaaccgaccUGCCUGGAc -3'
miRNA:   3'- -GGGUCUGgCUGU-UugACC--------------GCGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 49294 0.66 0.930761
Target:  5'- cCCCGGGCCug-GAGCUGGCcaGCgUGAc -3'
miRNA:   3'- -GGGUCUGGcugUUUGACCG--CGgACUu -5'
3613 3' -55.6 NC_001650.1 + 27535 0.66 0.935766
Target:  5'- --uGGGCC-ACGGGCUGGCcuGCCUGGc -3'
miRNA:   3'- gggUCUGGcUGUUUGACCG--CGGACUu -5'
3613 3' -55.6 NC_001650.1 + 49893 0.66 0.935766
Target:  5'- aUCAGGCgGGCGAcCUGGcCGcCCUGGc -3'
miRNA:   3'- gGGUCUGgCUGUUuGACC-GC-GGACUu -5'
3613 3' -55.6 NC_001650.1 + 130892 0.66 0.940535
Target:  5'- cCCCgAGACCcACGAGCgGGU-CCUGGAg -3'
miRNA:   3'- -GGG-UCUGGcUGUUUGaCCGcGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 111740 0.68 0.875161
Target:  5'- aCCCAGGugguguuuCUaGAgGAGCUGuGCGCCUGGg -3'
miRNA:   3'- -GGGUCU--------GG-CUgUUUGAC-CGCGGACUu -5'
3613 3' -55.6 NC_001650.1 + 154352 0.68 0.867855
Target:  5'- cUCCAGGucuuCCaGCAGACUGGCcaGUCUGAGg -3'
miRNA:   3'- -GGGUCU----GGcUGUUUGACCG--CGGACUU- -5'
3613 3' -55.6 NC_001650.1 + 121651 0.68 0.867113
Target:  5'- gCCCAGGCCccccgagGACGAcCUGGCgGCCa--- -3'
miRNA:   3'- -GGGUCUGG-------CUGUUuGACCG-CGGacuu -5'
3613 3' -55.6 NC_001650.1 + 156582 0.72 0.636588
Target:  5'- gCCAGGCCGACGcccAGCUcGGCGCa-GAAc -3'
miRNA:   3'- gGGUCUGGCUGU---UUGA-CCGCGgaCUU- -5'
3613 3' -55.6 NC_001650.1 + 61199 0.7 0.756245
Target:  5'- cCCCuGACCgGGCGAugUGGggggguUGCCUGAc -3'
miRNA:   3'- -GGGuCUGG-CUGUUugACC------GCGGACUu -5'
3613 3' -55.6 NC_001650.1 + 88744 0.7 0.784323
Target:  5'- cCCCcGGCCGGCAAGCggGGCaggccgacgcGCCUGc- -3'
miRNA:   3'- -GGGuCUGGCUGUUUGa-CCG----------CGGACuu -5'
3613 3' -55.6 NC_001650.1 + 95753 0.69 0.819822
Target:  5'- cCCCGcGCCaGCGAGCUGGUGaCCUGc- -3'
miRNA:   3'- -GGGUcUGGcUGUUUGACCGC-GGACuu -5'
3613 3' -55.6 NC_001650.1 + 74770 0.69 0.828294
Target:  5'- aCCCGGG-CGGCAuGCUGG-GCCUGc- -3'
miRNA:   3'- -GGGUCUgGCUGUuUGACCgCGGACuu -5'
3613 3' -55.6 NC_001650.1 + 137279 0.69 0.828294
Target:  5'- uCCCGGGCUGGCAGAUgaaGGa-CCUGAc -3'
miRNA:   3'- -GGGUCUGGCUGUUUGa--CCgcGGACUu -5'
3613 3' -55.6 NC_001650.1 + 46513 0.69 0.836589
Target:  5'- gUCgGGGCCGGCGgcGACcgGGCGcCCUGGc -3'
miRNA:   3'- -GGgUCUGGCUGU--UUGa-CCGC-GGACUu -5'
3613 3' -55.6 NC_001650.1 + 120907 0.68 0.860339
Target:  5'- cCCCaAGcACCGccGCGAGCUGcGCGCgCUGGc -3'
miRNA:   3'- -GGG-UC-UGGC--UGUUUGAC-CGCG-GACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.