miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3613 5' -61 NC_001650.1 + 122298 0.66 0.789706
Target:  5'- ---cCCCGcGGCGCGCgagcagcugGCCGcCGCGg -3'
miRNA:   3'- ccaaGGGUuCCGCGCGg--------CGGCuGCGC- -5'
3613 5' -61 NC_001650.1 + 125555 0.66 0.781025
Target:  5'- --gUCCCucGGCGCacgGCCGCCGcC-CGa -3'
miRNA:   3'- ccaAGGGuuCCGCG---CGGCGGCuGcGC- -5'
3613 5' -61 NC_001650.1 + 164874 0.66 0.781025
Target:  5'- uGGgaggCCCugacuAGaGCGCGCCGCCGcCa-- -3'
miRNA:   3'- -CCaa--GGGu----UC-CGCGCGGCGGCuGcgc -5'
3613 5' -61 NC_001650.1 + 60617 0.66 0.781025
Target:  5'- cGGggCUCAAGGCccuggaGCUGCUGAuCGUGg -3'
miRNA:   3'- -CCaaGGGUUCCGcg----CGGCGGCU-GCGC- -5'
3613 5' -61 NC_001650.1 + 157048 0.66 0.781025
Target:  5'- uGGUUCgauuCCAAuGGCGgggcUGCUGCCaGACGCc -3'
miRNA:   3'- -CCAAG----GGUU-CCGC----GCGGCGG-CUGCGc -5'
3613 5' -61 NC_001650.1 + 80220 0.66 0.772224
Target:  5'- ---gCCCAAGGgacgcaggacgUGCGCCGCCuucuACGUGa -3'
miRNA:   3'- ccaaGGGUUCC-----------GCGCGGCGGc---UGCGC- -5'
3613 5' -61 NC_001650.1 + 120749 0.66 0.771338
Target:  5'- ---cCCCAccGCGCccugcagGUCGCCGGCGCc -3'
miRNA:   3'- ccaaGGGUucCGCG-------CGGCGGCUGCGc -5'
3613 5' -61 NC_001650.1 + 125026 0.66 0.763313
Target:  5'- aGGgggUCCCGGGG-GCGgaggaCGCCGG-GCGg -3'
miRNA:   3'- -CCa--AGGGUUCCgCGCg----GCGGCUgCGC- -5'
3613 5' -61 NC_001650.1 + 21786 0.66 0.763313
Target:  5'- gGGgaCgCCGGGGaggGCGCCGgCCGAgGCc -3'
miRNA:   3'- -CCaaG-GGUUCCg--CGCGGC-GGCUgCGc -5'
3613 5' -61 NC_001650.1 + 156043 0.66 0.763313
Target:  5'- cGGggUCCCugGAGGaCGCGUgCGCgGGCGgGg -3'
miRNA:   3'- -CCa-AGGG--UUCC-GCGCG-GCGgCUGCgC- -5'
3613 5' -61 NC_001650.1 + 175795 0.66 0.754297
Target:  5'- ---aCUCAgggaGGGCGCGCCGCUcccaGGCaGCGu -3'
miRNA:   3'- ccaaGGGU----UCCGCGCGGCGG----CUG-CGC- -5'
3613 5' -61 NC_001650.1 + 91142 0.66 0.754297
Target:  5'- gGGUccUCCCGgccgcGGGgGCuGCUGCgGAUGCu -3'
miRNA:   3'- -CCA--AGGGU-----UCCgCG-CGGCGgCUGCGc -5'
3613 5' -61 NC_001650.1 + 9088 0.66 0.754297
Target:  5'- ---aCUCAgggaGGGCGCGCCGCUcccaGGCaGCGu -3'
miRNA:   3'- ccaaGGGU----UCCGCGCGGCGG----CUG-CGC- -5'
3613 5' -61 NC_001650.1 + 134534 0.66 0.745185
Target:  5'- aGGgcCCCGGGGgGCGCCGggggggaaGACGgGu -3'
miRNA:   3'- -CCaaGGGUUCCgCGCGGCgg------CUGCgC- -5'
3613 5' -61 NC_001650.1 + 129956 0.66 0.745185
Target:  5'- cGGgcacgCCCcugGAGGCGC-CCGU-GGCGCGg -3'
miRNA:   3'- -CCaa---GGG---UUCCGCGcGGCGgCUGCGC- -5'
3613 5' -61 NC_001650.1 + 95970 0.66 0.745185
Target:  5'- --aUCCUGAGGCaggucaccaGCuCGCUGGCGCGg -3'
miRNA:   3'- ccaAGGGUUCCGcg-------CG-GCGGCUGCGC- -5'
3613 5' -61 NC_001650.1 + 84086 0.67 0.735984
Target:  5'- uGGUgUCCAAGGaCGCGUacaaGCCcGCGUGc -3'
miRNA:   3'- -CCAaGGGUUCC-GCGCGg---CGGcUGCGC- -5'
3613 5' -61 NC_001650.1 + 47895 0.67 0.735984
Target:  5'- --aUCCCAgcaaaaGGGCGCGCCGgUG-UGCc -3'
miRNA:   3'- ccaAGGGU------UCCGCGCGGCgGCuGCGc -5'
3613 5' -61 NC_001650.1 + 42507 0.67 0.726703
Target:  5'- ---cCCCAguguguuugggcAGGUGgGCCaCCGGCGCGc -3'
miRNA:   3'- ccaaGGGU------------UCCGCgCGGcGGCUGCGC- -5'
3613 5' -61 NC_001650.1 + 96257 0.67 0.726703
Target:  5'- --gUgCCGGGG-GCGCUGCCGAUgacaGCGa -3'
miRNA:   3'- ccaAgGGUUCCgCGCGGCGGCUG----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.