miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 180713 0.66 0.673967
Target:  5'- --uUCAGUuUCAGuGGuGGGUGGUCCCCc -3'
miRNA:   3'- ucuGGUCGuGGUC-CC-CCCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 14006 0.66 0.673967
Target:  5'- --uUCAGUuUCAGuGGuGGGUGGUCCCCc -3'
miRNA:   3'- ucuGGUCGuGGUC-CC-CCCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 30460 0.66 0.673967
Target:  5'- uGGGgCGGC-UCAGGGGGGUc-UCgCCCa -3'
miRNA:   3'- -UCUgGUCGuGGUCCCCCCGucAG-GGG- -5'
3614 3' -62.8 NC_001650.1 + 132810 0.66 0.673967
Target:  5'- gGGGCCAGCGCCuccGcGGGcCAGUUCUUg -3'
miRNA:   3'- -UCUGGUCGUGGuccC-CCC-GUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 100129 0.66 0.673967
Target:  5'- uGACCcGgGCCGGGGaGGGgGGgaCCCu -3'
miRNA:   3'- uCUGGuCgUGGUCCC-CCCgUCagGGG- -5'
3614 3' -62.8 NC_001650.1 + 90947 0.66 0.673967
Target:  5'- -aACCAGCACCGGGGaguugcaGGCcacgcacaGGUUCUCg -3'
miRNA:   3'- ucUGGUCGUGGUCCCc------CCG--------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 58625 0.66 0.673967
Target:  5'- gAGAggGGCGCCAucGcGGaGGGCuacgcGUCCCCg -3'
miRNA:   3'- -UCUggUCGUGGU--C-CC-CCCGu----CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 111497 0.66 0.673005
Target:  5'- cGGCgGGCACUguuGGGGcGGGCAcugcugcgggcgaGgCCCCa -3'
miRNA:   3'- uCUGgUCGUGG---UCCC-CCCGU-------------CaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 25348 0.66 0.673005
Target:  5'- uGGAgCAGgACCAGGugucugccgucccGGGaGCAGaUCCCg -3'
miRNA:   3'- -UCUgGUCgUGGUCC-------------CCC-CGUC-AGGGg -5'
3614 3' -62.8 NC_001650.1 + 36486 0.66 0.664329
Target:  5'- cAGGCaGGgACC-GGGGGGCAGggCCa -3'
miRNA:   3'- -UCUGgUCgUGGuCCCCCCGUCagGGg -5'
3614 3' -62.8 NC_001650.1 + 135019 0.66 0.664329
Target:  5'- gAGACgGGUgaauuugauACCGGGGGGaC-GUCCUCg -3'
miRNA:   3'- -UCUGgUCG---------UGGUCCCCCcGuCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 53046 0.66 0.664329
Target:  5'- -cGCCcGCucCCAGGGcGGGCAGggCgCCg -3'
miRNA:   3'- ucUGGuCGu-GGUCCC-CCCGUCa-GgGG- -5'
3614 3' -62.8 NC_001650.1 + 141869 0.66 0.663364
Target:  5'- aGGGCCucGGgGCCuGGGGGuguuuugcuucgcGCGGgggCCCCc -3'
miRNA:   3'- -UCUGG--UCgUGGuCCCCC-------------CGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 75413 0.66 0.660467
Target:  5'- gAGACCcgaucuAGC-UCAGGGGGGCGGgcgaggaagcgagCgCCg -3'
miRNA:   3'- -UCUGG------UCGuGGUCCCCCCGUCa------------GgGG- -5'
3614 3' -62.8 NC_001650.1 + 102396 0.66 0.654667
Target:  5'- ---gCAGCAgCAGGGGGGgAGcggggCCgCCa -3'
miRNA:   3'- ucugGUCGUgGUCCCCCCgUCa----GG-GG- -5'
3614 3' -62.8 NC_001650.1 + 143102 0.66 0.654667
Target:  5'- -cGCCGGCugCAcgggccGGGGcGGCGGcggccauuUCCCUg -3'
miRNA:   3'- ucUGGUCGugGU------CCCC-CCGUC--------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 4618 0.66 0.654667
Target:  5'- gAGGCCGGCcaAUgGGGgacGGGGUggagGGUCCCg -3'
miRNA:   3'- -UCUGGUCG--UGgUCC---CCCCG----UCAGGGg -5'
3614 3' -62.8 NC_001650.1 + 171325 0.66 0.654667
Target:  5'- gAGGCCGGCcaAUgGGGgacGGGGUggagGGUCCCg -3'
miRNA:   3'- -UCUGGUCG--UGgUCC---CCCCG----UCAGGGg -5'
3614 3' -62.8 NC_001650.1 + 90790 0.66 0.654667
Target:  5'- aAGACCcucuGCGCgAacacguGGGGGGCAgguugaugcuGUCCaCCa -3'
miRNA:   3'- -UCUGGu---CGUGgU------CCCCCCGU----------CAGG-GG- -5'
3614 3' -62.8 NC_001650.1 + 31007 0.66 0.654667
Target:  5'- aGGAgCAGgGCCuGGcuGGGGCGGggggcgCCCUc -3'
miRNA:   3'- -UCUgGUCgUGGuCC--CCCCGUCa-----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.