miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 108129 0.66 0.622707
Target:  5'- uGACCucgcgggcauguuuGGCACUuccgcguGGcuGGGGCGgGUCCCCg -3'
miRNA:   3'- uCUGG--------------UCGUGGu------CC--CCCCGU-CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 30460 0.66 0.673967
Target:  5'- uGGGgCGGC-UCAGGGGGGUc-UCgCCCa -3'
miRNA:   3'- -UCUgGUCGuGGUCCCCCCGucAG-GGG- -5'
3614 3' -62.8 NC_001650.1 + 156147 0.66 0.635303
Target:  5'- gAGAaCAGCACCAGcagcGGGUGGaugCCCCg -3'
miRNA:   3'- -UCUgGUCGUGGUCcc--CCCGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 75413 0.66 0.660467
Target:  5'- gAGACCcgaucuAGC-UCAGGGGGGCGGgcgaggaagcgagCgCCg -3'
miRNA:   3'- -UCUGG------UCGuGGUCCCCCCGUCa------------GgGG- -5'
3614 3' -62.8 NC_001650.1 + 90790 0.66 0.654667
Target:  5'- aAGACCcucuGCGCgAacacguGGGGGGCAgguugaugcuGUCCaCCa -3'
miRNA:   3'- -UCUGGu---CGUGgU------CCCCCCGU----------CAGG-GG- -5'
3614 3' -62.8 NC_001650.1 + 85093 0.66 0.64499
Target:  5'- gAGGCCAuCACCc-GGGGGCAGUacgagaacaaCCUg -3'
miRNA:   3'- -UCUGGUcGUGGucCCCCCGUCAg---------GGG- -5'
3614 3' -62.8 NC_001650.1 + 171496 0.66 0.64499
Target:  5'- cAGGCCGGgGCUcGaGGGGUAGgccuccgguucUCCCCa -3'
miRNA:   3'- -UCUGGUCgUGGuCcCCCCGUC-----------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 31007 0.66 0.654667
Target:  5'- aGGAgCAGgGCCuGGcuGGGGCGGggggcgCCCUc -3'
miRNA:   3'- -UCUgGUCgUGGuCC--CCCCGUCa-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 36486 0.66 0.664329
Target:  5'- cAGGCaGGgACC-GGGGGGCAGggCCa -3'
miRNA:   3'- -UCUGgUCgUGGuCCCCCCGUCagGGg -5'
3614 3' -62.8 NC_001650.1 + 157856 0.66 0.643052
Target:  5'- uGGCCAGgguggaggugcaCACCaggguguugagggagAGGGGGGCgcuggucucgucaaaGGUCCUCa -3'
miRNA:   3'- uCUGGUC------------GUGG---------------UCCCCCCG---------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 128261 0.66 0.625613
Target:  5'- cGGGCCcGUGCCcGaGGGGGUGGggCCCa -3'
miRNA:   3'- -UCUGGuCGUGGuC-CCCCCGUCagGGG- -5'
3614 3' -62.8 NC_001650.1 + 102396 0.66 0.654667
Target:  5'- ---gCAGCAgCAGGGGGGgAGcggggCCgCCa -3'
miRNA:   3'- ucugGUCGUgGUCCCCCCgUCa----GG-GG- -5'
3614 3' -62.8 NC_001650.1 + 130860 0.66 0.64499
Target:  5'- gAGGCCAagACC-GGGGGGCuGgacaagagcgCCCCc -3'
miRNA:   3'- -UCUGGUcgUGGuCCCCCCGuCa---------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 117643 0.66 0.64499
Target:  5'- cGGCCuGCAugacccugaccCCGGGcguGGGGCAcaCCCCg -3'
miRNA:   3'- uCUGGuCGU-----------GGUCC---CCCCGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 4789 0.66 0.64499
Target:  5'- cAGGCCGGgGCUcGaGGGGUAGgccuccgguucUCCCCa -3'
miRNA:   3'- -UCUGGUCgUGGuCcCCCCGUC-----------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 90947 0.66 0.673967
Target:  5'- -aACCAGCACCGGGGaguugcaGGCcacgcacaGGUUCUCg -3'
miRNA:   3'- ucUGGUCGUGGUCCCc------CCG--------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 86925 0.66 0.64499
Target:  5'- cAGAaCAGCACCAGGGccaGGUacAGguugauggCCCCg -3'
miRNA:   3'- -UCUgGUCGUGGUCCCc--CCG--UCa-------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 170687 0.66 0.651765
Target:  5'- aGGGgUGGCGCCcGGGGcGGaGCucgcccacggacagAGUCCCCa -3'
miRNA:   3'- -UCUgGUCGUGG-UCCC-CC-CG--------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 89105 0.66 0.635303
Target:  5'- cGACCGccCACC-GGGGGGCA-UCCUg -3'
miRNA:   3'- uCUGGUc-GUGGuCCCCCCGUcAGGGg -5'
3614 3' -62.8 NC_001650.1 + 132810 0.66 0.673967
Target:  5'- gGGGCCAGCGCCuccGcGGGcCAGUUCUUg -3'
miRNA:   3'- -UCUGGUCGUGGuccC-CCC-GUCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.