miRNA display CGI


Results 61 - 80 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 145868 0.67 0.558264
Target:  5'- -uACCAGCGCuCGGGGGacauggggcuGGgGGUgCCCu -3'
miRNA:   3'- ucUGGUCGUG-GUCCCC----------CCgUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 121017 0.67 0.558264
Target:  5'- uGGGCUugGGCAgggagaccUCGGGGGGcGCGGUCCa- -3'
miRNA:   3'- -UCUGG--UCGU--------GGUCCCCC-CGUCAGGgg -5'
3614 3' -62.8 NC_001650.1 + 48490 0.67 0.555415
Target:  5'- -cACCAGCuuggcccuguggGCUAGGGGGcuagccgccuggaaGCAGcCCCCc -3'
miRNA:   3'- ucUGGUCG------------UGGUCCCCC--------------CGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 129180 0.67 0.606255
Target:  5'- -cGCCGGUgGCCAGGuGGGGac-UCCCCc -3'
miRNA:   3'- ucUGGUCG-UGGUCC-CCCCgucAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 82744 0.67 0.615929
Target:  5'- uGGgCAGCAgCAGGGGGcccgGGUgCCCg -3'
miRNA:   3'- uCUgGUCGUgGUCCCCCcg--UCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 102460 0.67 0.613025
Target:  5'- cAGcACCuGCGCCGGcugcgccgucugguGGGaGGCGGcUCCCUg -3'
miRNA:   3'- -UC-UGGuCGUGGUC--------------CCC-CCGUC-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 114471 0.67 0.606255
Target:  5'- gGGACCGGgAUgcuGGGGGCGGcCUCCu -3'
miRNA:   3'- -UCUGGUCgUGgucCCCCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 134137 0.67 0.606255
Target:  5'- -uGCCGGggUCuGGGGGGC-GcCCCCa -3'
miRNA:   3'- ucUGGUCguGGuCCCCCCGuCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 121574 0.67 0.606255
Target:  5'- uGGCCAGCAUgguggagaAGGGuGGCAGgCCUCg -3'
miRNA:   3'- uCUGGUCGUGg-------UCCCcCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 28509 0.67 0.615929
Target:  5'- uGGACuCGGCcgcCCGGGGGGaGUuuguGUCCUg -3'
miRNA:   3'- -UCUG-GUCGu--GGUCCCCC-CGu---CAGGGg -5'
3614 3' -62.8 NC_001650.1 + 130176 0.67 0.615929
Target:  5'- aGGGCCcGCGCCAcGGgcgccuccaGGGGC-GUgCCCg -3'
miRNA:   3'- -UCUGGuCGUGGU-CC---------CCCCGuCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 127395 0.67 0.586965
Target:  5'- gAGACCGGgGCCGauGGGGGGUuggCCa- -3'
miRNA:   3'- -UCUGGUCgUGGU--CCCCCCGucaGGgg -5'
3614 3' -62.8 NC_001650.1 + 72274 0.67 0.586004
Target:  5'- uGGCCAGCcaccuugACCAGGGccugcuccaGGGCcacuaucUCCCCg -3'
miRNA:   3'- uCUGGUCG-------UGGUCCC---------CCCGuc-----AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 47733 0.67 0.557314
Target:  5'- uAGACCcagggauAGC-UCAGGGGGGUc--CCCCa -3'
miRNA:   3'- -UCUGG-------UCGuGGUCCCCCCGucaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 96446 0.67 0.596598
Target:  5'- uGACCAGCgACCc-GGGGGCg--CCCa -3'
miRNA:   3'- uCUGGUCG-UGGucCCCCCGucaGGGg -5'
3614 3' -62.8 NC_001650.1 + 132333 0.68 0.527173
Target:  5'- gGGugUAGUagcuGCCGGuGGGcGGCccguagggguagggGGUCCCCg -3'
miRNA:   3'- -UCugGUCG----UGGUC-CCC-CCG--------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 22245 0.68 0.548782
Target:  5'- cGGACUAcuuuggggugguGUACCAGGuGGGCGGgaUCUCCa -3'
miRNA:   3'- -UCUGGU------------CGUGGUCCcCCCGUC--AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 133514 0.68 0.529975
Target:  5'- cGcCCGGCGCCuccuGGGCAGcCCCCu -3'
miRNA:   3'- uCuGGUCGUGGucccCCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 89199 0.68 0.545003
Target:  5'- gAGAUCgugaGGCggGCCAGGGcGGGCGGcggcaacugcuggCCCCu -3'
miRNA:   3'- -UCUGG----UCG--UGGUCCC-CCCGUCa------------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 21512 0.68 0.548782
Target:  5'- -cGCCGGgACCGGGGGGGCuacugcugggAGggCCgCg -3'
miRNA:   3'- ucUGGUCgUGGUCCCCCCG----------UCa-GGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.