Results 1 - 20 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3614 | 3' | -62.8 | NC_001650.1 | + | 32247 | 1.1 | 0.000702 |
Target: 5'- aAGACCAGCACCAGGGGGGCAGUCCCCu -3' miRNA: 3'- -UCUGGUCGUGGUCCCCCCGUCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 35156 | 0.79 | 0.112597 |
Target: 5'- aAGACCccaGGCGCCGcGGGGGUGGUgCCCCa -3' miRNA: 3'- -UCUGG---UCGUGGUcCCCCCGUCA-GGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 157280 | 0.77 | 0.147516 |
Target: 5'- uAGcCCAuGCGCCuGGGGGGCAccUCCCCg -3' miRNA: 3'- -UCuGGU-CGUGGuCCCCCCGUc-AGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 71981 | 0.77 | 0.162499 |
Target: 5'- -uGCCAGCACCuGGGcGGGGCGgccGUCUCCa -3' miRNA: 3'- ucUGGUCGUGG-UCC-CCCCGU---CAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 27211 | 0.77 | 0.166454 |
Target: 5'- cGACCGGC-CaCAGGGGGGCGGgcgacugcagCCUCa -3' miRNA: 3'- uCUGGUCGuG-GUCCCCCCGUCa---------GGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 67314 | 0.75 | 0.210953 |
Target: 5'- aAGAgCAGgGgCAGGGGcacgucgcugucGGCGGUCCCCa -3' miRNA: 3'- -UCUgGUCgUgGUCCCC------------CCGUCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 89955 | 0.74 | 0.231453 |
Target: 5'- -cACCAGCcCCAcgcaaggcGGGGGGUGGUCuCCCa -3' miRNA: 3'- ucUGGUCGuGGU--------CCCCCCGUCAG-GGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 123592 | 0.74 | 0.25941 |
Target: 5'- uGugCuGCGCCAGGGGGGCuccauagCgCCCg -3' miRNA: 3'- uCugGuCGUGGUCCCCCCGuca----G-GGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 35808 | 0.73 | 0.265323 |
Target: 5'- cGGCCGucccGCGCCAGGGGGGCgcggccagGGaCUCCu -3' miRNA: 3'- uCUGGU----CGUGGUCCCCCCG--------UCaGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 172628 | 0.73 | 0.290064 |
Target: 5'- -aACCAGgGCCuucauuggccauGGGGugaguGGGCAGUCCCCc -3' miRNA: 3'- ucUGGUCgUGG------------UCCC-----CCCGUCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 128951 | 0.73 | 0.290064 |
Target: 5'- aAGAUCgAGCAgauCCucGGGGGgAGUCCCCa -3' miRNA: 3'- -UCUGG-UCGU---GGucCCCCCgUCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 117697 | 0.73 | 0.296525 |
Target: 5'- aGGGCCAGUaACCAgcuggugacgguGGGGGGCGcUCCgCCg -3' miRNA: 3'- -UCUGGUCG-UGGU------------CCCCCCGUcAGG-GG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 131424 | 0.73 | 0.296525 |
Target: 5'- gGGACCGGguCCAcGGaGGGCcuGGUCUCCa -3' miRNA: 3'- -UCUGGUCguGGUcCC-CCCG--UCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 142735 | 0.72 | 0.302436 |
Target: 5'- gAGACCAgGCGCCcGGaguuugcGGaGGCGGUCUCCa -3' miRNA: 3'- -UCUGGU-CGUGGuCC-------CC-CCGUCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 52937 | 0.72 | 0.309782 |
Target: 5'- --cCCGGCGCCcGGaGGGGCcgggGGUUCCCa -3' miRNA: 3'- ucuGGUCGUGGuCC-CCCCG----UCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 134534 | 0.72 | 0.316578 |
Target: 5'- aGGGCCccggggGGCGCCGGGGGGGaagacgggUAGUCuggCCCu -3' miRNA: 3'- -UCUGG------UCGUGGUCCCCCC--------GUCAG---GGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 5921 | 0.72 | 0.316578 |
Target: 5'- -aACCAGgGCCuucauuggccauGGGGuugaguGGGCAGUCCCCc -3' miRNA: 3'- ucUGGUCgUGG------------UCCC------CCCGUCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 3981 | 0.72 | 0.321402 |
Target: 5'- aGGGgUGGCGCCGGGGcGGaGCucgcccacggacagAGUCCCCa -3' miRNA: 3'- -UCUgGUCGUGGUCCC-CC-CG--------------UCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 95394 | 0.72 | 0.323486 |
Target: 5'- aAGGCCAGUugUAGGGuGGGU--UCCCg -3' miRNA: 3'- -UCUGGUCGugGUCCC-CCCGucAGGGg -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 23646 | 0.72 | 0.323486 |
Target: 5'- cAGucauCCGGCACCuGGGGGGUc-UCCCa -3' miRNA: 3'- -UCu---GGUCGUGGuCCCCCCGucAGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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