miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 164896 0.7 0.430834
Target:  5'- uGugCAGCGgcgcgagUCGGGGGGGUugagcgccgcGGUCCCa -3'
miRNA:   3'- uCugGUCGU-------GGUCCCCCCG----------UCAGGGg -5'
3614 3' -62.8 NC_001650.1 + 52703 0.7 0.431679
Target:  5'- cGGGCCgcAGCGgggagacgguCCAGGGGgccacgguGGCGGUCUCCc -3'
miRNA:   3'- -UCUGG--UCGU----------GGUCCCC--------CCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 158370 0.7 0.431679
Target:  5'- aAGAaccCCAGCGugAGGGaGGCGGUCaCCCa -3'
miRNA:   3'- -UCU---GGUCGUggUCCCcCCGUCAG-GGG- -5'
3614 3' -62.8 NC_001650.1 + 61338 0.7 0.431679
Target:  5'- gGGACCcgggGGCGgCGGGGGaGGCgAGcUCCUCa -3'
miRNA:   3'- -UCUGG----UCGUgGUCCCC-CCG-UC-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 122283 0.7 0.431679
Target:  5'- uAGGCCAGggUCAGGGGGcGCcugaugugggccAG-CCCCg -3'
miRNA:   3'- -UCUGGUCguGGUCCCCC-CG------------UCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 28065 0.7 0.431679
Target:  5'- uGACCgaGGcCACCacGGGGGGGaaccuGUCCCUg -3'
miRNA:   3'- uCUGG--UC-GUGG--UCCCCCCgu---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 29373 0.7 0.440185
Target:  5'- cAGGCgCAGCGuCCAGGGGgcGGCGGUggCCu -3'
miRNA:   3'- -UCUG-GUCGU-GGUCCCC--CCGUCAggGG- -5'
3614 3' -62.8 NC_001650.1 + 89528 0.7 0.440185
Target:  5'- cGGGCCAGguCCAGGGucagcaGGGCGugcgCCCUc -3'
miRNA:   3'- -UCUGGUCguGGUCCC------CCCGUca--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 102472 0.69 0.448787
Target:  5'- cAGGCC-GC-CCAGGaGGuGGCGGUaCCCa -3'
miRNA:   3'- -UCUGGuCGuGGUCC-CC-CCGUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 62880 0.69 0.448787
Target:  5'- gGGGCUccggAGCACCcGGGGGcGCGacCCCCa -3'
miRNA:   3'- -UCUGG----UCGUGGuCCCCC-CGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 88607 0.69 0.45748
Target:  5'- uGAUCAGgacgGCCAGGGGGGUcuacuccugCCCCg -3'
miRNA:   3'- uCUGGUCg---UGGUCCCCCCGuca------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 82661 0.69 0.45748
Target:  5'- aAGAgCAGcCACaugAGGGGcaGGgGGUCCCCa -3'
miRNA:   3'- -UCUgGUC-GUGg--UCCCC--CCgUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 93345 0.69 0.45748
Target:  5'- gGGGCCAGUACgAGcaccugacGGGGGCGG-CCUUu -3'
miRNA:   3'- -UCUGGUCGUGgUC--------CCCCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 102551 0.69 0.45748
Target:  5'- uGACCGGUAUCuGGGa-GUGGUCCCCc -3'
miRNA:   3'- uCUGGUCGUGGuCCCccCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 4360 0.69 0.466262
Target:  5'- uGGCCAGagaugacguGCCAGGcauGGGGCAaucGUCCUCg -3'
miRNA:   3'- uCUGGUCg--------UGGUCC---CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 171067 0.69 0.466262
Target:  5'- uGGCCAGagaugacguGCCAGGcauGGGGCAaucGUCCUCg -3'
miRNA:   3'- uCUGGUCg--------UGGUCC---CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 181761 0.69 0.466262
Target:  5'- -uGCCAGCgggccGCUGGGGGGGaAGggacggCCCCg -3'
miRNA:   3'- ucUGGUCG-----UGGUCCCCCCgUCa-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 180847 0.69 0.466262
Target:  5'- gGGGCUccauggucccggGGguCCAGGGGGGCGccucUCUCCg -3'
miRNA:   3'- -UCUGG------------UCguGGUCCCCCCGUc---AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 15054 0.69 0.466262
Target:  5'- -uGCCAGCgggccGCUGGGGGGGaAGggacggCCCCg -3'
miRNA:   3'- ucUGGUCG-----UGGUCCCCCCgUCa-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 14140 0.69 0.466262
Target:  5'- gGGGCUccauggucccggGGguCCAGGGGGGCGccucUCUCCg -3'
miRNA:   3'- -UCUGG------------UCguGGUCCCCCCGUc---AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.