miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 58627 0.69 0.4698
Target:  5'- uGugCAGCAUCuccagggugggguuGGGGGGCAGguggugguccgCCCUg -3'
miRNA:   3'- uCugGUCGUGGu-------------CCCCCCGUCa----------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 142955 0.69 0.475132
Target:  5'- cAGACCGGUGCCAGGGGccauGCAuGcUCUCUc -3'
miRNA:   3'- -UCUGGUCGUGGUCCCCc---CGU-C-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 23495 0.69 0.475132
Target:  5'- uGugCAGCGCCcuGGGGGagaAGaacucggucuUCCCCu -3'
miRNA:   3'- uCugGUCGUGGucCCCCCg--UC----------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 22350 0.69 0.484084
Target:  5'- uGGGCCuGCACCuGGGGGuggugggcaGCGGggaggaCCCg -3'
miRNA:   3'- -UCUGGuCGUGGuCCCCC---------CGUCag----GGG- -5'
3614 3' -62.8 NC_001650.1 + 133904 0.69 0.484084
Target:  5'- gGGACCgcGGCGcCCAGaguacagcuGGGGGCGccCCCCa -3'
miRNA:   3'- -UCUGG--UCGU-GGUC---------CCCCCGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 124771 0.69 0.484084
Target:  5'- gGGACgGGCGC--GGGGGGCcGUCUgCa -3'
miRNA:   3'- -UCUGgUCGUGguCCCCCCGuCAGGgG- -5'
3614 3' -62.8 NC_001650.1 + 21664 0.68 0.502226
Target:  5'- uGACCAGCggggacgacgGCgCGGGGGGGCccugcaCCCUg -3'
miRNA:   3'- uCUGGUCG----------UG-GUCCCCCCGuca---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 65871 0.68 0.511408
Target:  5'- gAGACCGGCAgCAGGuuaaaGGuGGCcacgugccuGUCCCUg -3'
miRNA:   3'- -UCUGGUCGUgGUCC-----CC-CCGu--------CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 132197 0.68 0.511408
Target:  5'- gAGGCCcauGU-CCAGcGGGGGCAGcgugCUCCa -3'
miRNA:   3'- -UCUGGu--CGuGGUC-CCCCCGUCa---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 157513 0.68 0.511408
Target:  5'- cGACCugGGCGagGGcGGGGGCGGggaggugCCCCc -3'
miRNA:   3'- uCUGG--UCGUggUC-CCCCCGUCa------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 40597 0.68 0.511408
Target:  5'- gGGGCUAGgGCUAGaGaGGGGCGGcuacaUCCUCa -3'
miRNA:   3'- -UCUGGUCgUGGUC-C-CCCCGUC-----AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 56274 0.68 0.511408
Target:  5'- uGGGCgaAGgACgGGGGGGGUGGUgCCUg -3'
miRNA:   3'- -UCUGg-UCgUGgUCCCCCCGUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 131907 0.68 0.511408
Target:  5'- aGGACgGGCggGCCAGGGcGGGCu-UCCUg -3'
miRNA:   3'- -UCUGgUCG--UGGUCCC-CCCGucAGGGg -5'
3614 3' -62.8 NC_001650.1 + 50653 0.68 0.511408
Target:  5'- gGGGCCGGUGCCcgcGGGGGGCcugaCCUu -3'
miRNA:   3'- -UCUGGUCGUGGu--CCCCCCGucagGGG- -5'
3614 3' -62.8 NC_001650.1 + 28880 0.68 0.520659
Target:  5'- gAGACCAGCAUCAuaGacGUGGUCCCCg -3'
miRNA:   3'- -UCUGGUCGUGGUccCccCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 168736 0.68 0.520659
Target:  5'- uGGCCauGGagGCCAGGGGGGaGGUaCCCa -3'
miRNA:   3'- uCUGG--UCg-UGGUCCCCCCgUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 83213 0.68 0.520659
Target:  5'- uGuCCaAGCugaaCAGGGGGGCGGUCgCg -3'
miRNA:   3'- uCuGG-UCGug--GUCCCCCCGUCAGgGg -5'
3614 3' -62.8 NC_001650.1 + 79115 0.68 0.520659
Target:  5'- cGGCgGGCGggAGGaGGGcCAGUCCCCu -3'
miRNA:   3'- uCUGgUCGUggUCCcCCC-GUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 2029 0.68 0.520659
Target:  5'- uGGCCauGGagGCCAGGGGGGaGGUaCCCa -3'
miRNA:   3'- uCUGG--UCg-UGGUCCCCCCgUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 59964 0.68 0.520659
Target:  5'- cAGGCCccGCuCCAGGGucagccgcaGGGCGGUcugggCCCCg -3'
miRNA:   3'- -UCUGGu-CGuGGUCCC---------CCCGUCA-----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.