miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 170687 0.66 0.651765
Target:  5'- aGGGgUGGCGCCcGGGGcGGaGCucgcccacggacagAGUCCCCa -3'
miRNA:   3'- -UCUgGUCGUGG-UCCC-CC-CG--------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 171496 0.66 0.64499
Target:  5'- cAGGCCGGgGCUcGaGGGGUAGgccuccgguucUCCCCa -3'
miRNA:   3'- -UCUGGUCgUGGuCcCCCCGUC-----------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 130860 0.66 0.64499
Target:  5'- gAGGCCAagACC-GGGGGGCuGgacaagagcgCCCCc -3'
miRNA:   3'- -UCUGGUcgUGGuCCCCCCGuCa---------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 86925 0.66 0.64499
Target:  5'- cAGAaCAGCACCAGGGccaGGUacAGguugauggCCCCg -3'
miRNA:   3'- -UCUgGUCGUGGUCCCc--CCG--UCa-------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 4789 0.66 0.64499
Target:  5'- cAGGCCGGgGCUcGaGGGGUAGgccuccgguucUCCCCa -3'
miRNA:   3'- -UCUGGUCgUGGuCcCCCCGUC-----------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 117643 0.66 0.64499
Target:  5'- cGGCCuGCAugacccugaccCCGGGcguGGGGCAcaCCCCg -3'
miRNA:   3'- uCUGGuCGU-----------GGUCC---CCCCGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 117253 0.66 0.64499
Target:  5'- aGGAUCAGaucCgCAGGGcGGCggccaGGUCCCCg -3'
miRNA:   3'- -UCUGGUCgu-G-GUCCCcCCG-----UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 58442 0.66 0.64499
Target:  5'- aAGGCCAGCGuCCA--GGGGCuGcCCgCCa -3'
miRNA:   3'- -UCUGGUCGU-GGUccCCCCGuCaGG-GG- -5'
3614 3' -62.8 NC_001650.1 + 85093 0.66 0.64499
Target:  5'- gAGGCCAuCACCc-GGGGGCAGUacgagaacaaCCUg -3'
miRNA:   3'- -UCUGGUcGUGGucCCCCCGUCAg---------GGG- -5'
3614 3' -62.8 NC_001650.1 + 51305 0.66 0.644021
Target:  5'- cGGcCCAGCACCAGGGgcugaacagguacGGGUuGUaCCUg -3'
miRNA:   3'- -UCuGGUCGUGGUCCC-------------CCCGuCA-GGGg -5'
3614 3' -62.8 NC_001650.1 + 157856 0.66 0.643052
Target:  5'- uGGCCAGgguggaggugcaCACCaggguguugagggagAGGGGGGCgcuggucucgucaaaGGUCCUCa -3'
miRNA:   3'- uCUGGUC------------GUGG---------------UCCCCCCG---------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 133159 0.66 0.639178
Target:  5'- cGGACCAccggagggcucGCGCCGcGGGGGGacccucgggcggcugUAGUCUCg -3'
miRNA:   3'- -UCUGGU-----------CGUGGU-CCCCCC---------------GUCAGGGg -5'
3614 3' -62.8 NC_001650.1 + 144140 0.66 0.635303
Target:  5'- gGGA-CAGCACCAGGcaccugcccGGGGCGaUCUCg -3'
miRNA:   3'- -UCUgGUCGUGGUCC---------CCCCGUcAGGGg -5'
3614 3' -62.8 NC_001650.1 + 156147 0.66 0.635303
Target:  5'- gAGAaCAGCACCAGcagcGGGUGGaugCCCCg -3'
miRNA:   3'- -UCUgGUCGUGGUCcc--CCCGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 89105 0.66 0.635303
Target:  5'- cGACCGccCACC-GGGGGGCA-UCCUg -3'
miRNA:   3'- uCUGGUc-GUGGuCCCCCCGUcAGGGg -5'
3614 3' -62.8 NC_001650.1 + 95710 0.66 0.635303
Target:  5'- gGGugCgGGCGCCGGGgaGGGGgAG-CCUCu -3'
miRNA:   3'- -UCugG-UCGUGGUCC--CCCCgUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 117352 0.66 0.635303
Target:  5'- -uGCCccuccuaaAGUACCAcGGGGGCGacGUCUCCa -3'
miRNA:   3'- ucUGG--------UCGUGGUcCCCCCGU--CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 128261 0.66 0.625613
Target:  5'- cGGGCCcGUGCCcGaGGGGGUGGggCCCa -3'
miRNA:   3'- -UCUGGuCGUGGuC-CCCCCGUCagGGG- -5'
3614 3' -62.8 NC_001650.1 + 158315 0.66 0.625613
Target:  5'- uGGGCCAGCcCCAGcugcaGGGGCAGgugUUUCa -3'
miRNA:   3'- -UCUGGUCGuGGUCc----CCCCGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 167540 0.66 0.625613
Target:  5'- gAGACCgaccaaugggGGC-CCGGGGGagggcGGCAG-CCCg -3'
miRNA:   3'- -UCUGG----------UCGuGGUCCCC-----CCGUCaGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.