miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 108129 0.66 0.622707
Target:  5'- uGACCucgcgggcauguuuGGCACUuccgcguGGcuGGGGCGgGUCCCCg -3'
miRNA:   3'- uCUGG--------------UCGUGGu------CC--CCCCGU-CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 32604 0.66 0.622707
Target:  5'- cAGugCuuuAGCGCCguacaggucaacgaGGGGGGGCAcGUCaacaCCu -3'
miRNA:   3'- -UCugG---UCGUGG--------------UCCCCCCGU-CAGg---GG- -5'
3614 3' -62.8 NC_001650.1 + 130176 0.67 0.615929
Target:  5'- aGGGCCcGCGCCAcGGgcgccuccaGGGGC-GUgCCCg -3'
miRNA:   3'- -UCUGGuCGUGGU-CC---------CCCCGuCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 82744 0.67 0.615929
Target:  5'- uGGgCAGCAgCAGGGGGcccgGGUgCCCg -3'
miRNA:   3'- uCUgGUCGUgGUCCCCCcg--UCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 28509 0.67 0.615929
Target:  5'- uGGACuCGGCcgcCCGGGGGGaGUuuguGUCCUg -3'
miRNA:   3'- -UCUG-GUCGu--GGUCCCCC-CGu---CAGGGg -5'
3614 3' -62.8 NC_001650.1 + 71056 0.67 0.615929
Target:  5'- uGGGCCAGCAgaaCAGGauGGCcaUCCCCu -3'
miRNA:   3'- -UCUGGUCGUg--GUCCccCCGucAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 71244 0.67 0.615929
Target:  5'- -aACguG-AUCAGGGGGGCGGagaaCCCCc -3'
miRNA:   3'- ucUGguCgUGGUCCCCCCGUCa---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 182024 0.67 0.615929
Target:  5'- aGGGgCGGCugCAcGGGGGGCAGa---- -3'
miRNA:   3'- -UCUgGUCGugGU-CCCCCCGUCagggg -5'
3614 3' -62.8 NC_001650.1 + 15317 0.67 0.615929
Target:  5'- aGGGgCGGCugCAcGGGGGGCAGa---- -3'
miRNA:   3'- -UCUgGUCGugGU-CCCCCCGUCagggg -5'
3614 3' -62.8 NC_001650.1 + 102460 0.67 0.613025
Target:  5'- cAGcACCuGCGCCGGcugcgccgucugguGGGaGGCGGcUCCCUg -3'
miRNA:   3'- -UC-UGGuCGUGGUC--------------CCC-CCGUC-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 114471 0.67 0.606255
Target:  5'- gGGACCGGgAUgcuGGGGGCGGcCUCCu -3'
miRNA:   3'- -UCUGGUCgUGgucCCCCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 121574 0.67 0.606255
Target:  5'- uGGCCAGCAUgguggagaAGGGuGGCAGgCCUCg -3'
miRNA:   3'- uCUGGUCGUGg-------UCCCcCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 134137 0.67 0.606255
Target:  5'- -uGCCGGggUCuGGGGGGC-GcCCCCa -3'
miRNA:   3'- ucUGGUCguGGuCCCCCCGuCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 129180 0.67 0.606255
Target:  5'- -cGCCGGUgGCCAGGuGGGGac-UCCCCc -3'
miRNA:   3'- ucUGGUCG-UGGUCC-CCCCgucAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 59746 0.67 0.606255
Target:  5'- gGGGCCcguGGC-CCccGGGGGCgAGgcgCCCCc -3'
miRNA:   3'- -UCUGG---UCGuGGucCCCCCG-UCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 106936 0.67 0.603356
Target:  5'- aAGGCCaucuguucccuggcGGCcCUGGGGGGcGCGGUCaCCa -3'
miRNA:   3'- -UCUGG--------------UCGuGGUCCCCC-CGUCAGgGG- -5'
3614 3' -62.8 NC_001650.1 + 94996 0.67 0.596598
Target:  5'- uGACCAuaGCCaAGGcccaGGGCAuGUCCCUg -3'
miRNA:   3'- uCUGGUcgUGG-UCCc---CCCGU-CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 130816 0.67 0.596598
Target:  5'- cGGACCuGGCGguccuCCAGGaGGaGGCGGccgCCCUg -3'
miRNA:   3'- -UCUGG-UCGU-----GGUCC-CC-CCGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 96446 0.67 0.596598
Target:  5'- uGACCAGCgACCc-GGGGGCg--CCCa -3'
miRNA:   3'- uCUGGUCG-UGGucCCCCCGucaGGGg -5'
3614 3' -62.8 NC_001650.1 + 23929 0.67 0.593706
Target:  5'- -uACCAGCAggUCAGGGGccagaagaguacacGG-GGUCCCCg -3'
miRNA:   3'- ucUGGUCGU--GGUCCCC--------------CCgUCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.