miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 760 0.68 0.548782
Target:  5'- gGGACCaaugggagagGGCGCUGGGaGGGGacucuagcUAGUCCCg -3'
miRNA:   3'- -UCUGG----------UCGUGGUCC-CCCC--------GUCAGGGg -5'
3614 3' -62.8 NC_001650.1 + 2029 0.68 0.520659
Target:  5'- uGGCCauGGagGCCAGGGGGGaGGUaCCCa -3'
miRNA:   3'- uCUGG--UCg-UGGUCCCCCCgUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 2912 0.7 0.423269
Target:  5'- -uAUUGGC-CCAGGGGGGCuGUCCa- -3'
miRNA:   3'- ucUGGUCGuGGUCCCCCCGuCAGGgg -5'
3614 3' -62.8 NC_001650.1 + 3981 0.72 0.321402
Target:  5'- aGGGgUGGCGCCGGGGcGGaGCucgcccacggacagAGUCCCCa -3'
miRNA:   3'- -UCUgGUCGUGGUCCC-CC-CG--------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 4360 0.69 0.466262
Target:  5'- uGGCCAGagaugacguGCCAGGcauGGGGCAaucGUCCUCg -3'
miRNA:   3'- uCUGGUCg--------UGGUCC---CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 4618 0.66 0.654667
Target:  5'- gAGGCCGGCcaAUgGGGgacGGGGUggagGGUCCCg -3'
miRNA:   3'- -UCUGGUCG--UGgUCC---CCCCG----UCAGGGg -5'
3614 3' -62.8 NC_001650.1 + 4789 0.66 0.64499
Target:  5'- cAGGCCGGgGCUcGaGGGGUAGgccuccgguucUCCCCa -3'
miRNA:   3'- -UCUGGUCgUGGuCcCCCCGUC-----------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 5921 0.72 0.316578
Target:  5'- -aACCAGgGCCuucauuggccauGGGGuugaguGGGCAGUCCCCc -3'
miRNA:   3'- ucUGGUCgUGG------------UCCC------CCCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 13856 0.68 0.520659
Target:  5'- --uUCAGgGCCAGGGucuGGCAgcGUCCCCc -3'
miRNA:   3'- ucuGGUCgUGGUCCCc--CCGU--CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 14006 0.66 0.673967
Target:  5'- --uUCAGUuUCAGuGGuGGGUGGUCCCCc -3'
miRNA:   3'- ucuGGUCGuGGUC-CC-CCCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 14140 0.69 0.466262
Target:  5'- gGGGCUccauggucccggGGguCCAGGGGGGCGccucUCUCCg -3'
miRNA:   3'- -UCUGG------------UCguGGUCCCCCCGUc---AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 15054 0.69 0.466262
Target:  5'- -uGCCAGCgggccGCUGGGGGGGaAGggacggCCCCg -3'
miRNA:   3'- ucUGGUCG-----UGGUCCCCCCgUCa-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 15317 0.67 0.615929
Target:  5'- aGGGgCGGCugCAcGGGGGGCAGa---- -3'
miRNA:   3'- -UCUgGUCGugGU-CCCCCCGUCagggg -5'
3614 3' -62.8 NC_001650.1 + 21512 0.68 0.548782
Target:  5'- -cGCCGGgACCGGGGGGGCuacugcugggAGggCCgCg -3'
miRNA:   3'- ucUGGUCgUGGUCCCCCCG----------UCa-GGgG- -5'
3614 3' -62.8 NC_001650.1 + 21664 0.68 0.502226
Target:  5'- uGACCAGCggggacgacgGCgCGGGGGGGCccugcaCCCUg -3'
miRNA:   3'- uCUGGUCG----------UG-GUCCCCCCGuca---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 21917 0.71 0.352232
Target:  5'- -cGCCuGCAUCAuGGGGGCGacGUCCCUg -3'
miRNA:   3'- ucUGGuCGUGGUcCCCCCGU--CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 22245 0.68 0.548782
Target:  5'- cGGACUAcuuuggggugguGUACCAGGuGGGCGGgaUCUCCa -3'
miRNA:   3'- -UCUGGU------------CGUGGUCCcCCCGUC--AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 22350 0.69 0.484084
Target:  5'- uGGGCCuGCACCuGGGGGuggugggcaGCGGggaggaCCCg -3'
miRNA:   3'- -UCUGGuCGUGGuCCCCC---------CGUCag----GGG- -5'
3614 3' -62.8 NC_001650.1 + 22635 0.67 0.567793
Target:  5'- --cCCAGCGCgCGGGGGGcGCGuacgCCUCg -3'
miRNA:   3'- ucuGGUCGUG-GUCCCCC-CGUca--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 23495 0.69 0.475132
Target:  5'- uGugCAGCGCCcuGGGGGagaAGaacucggucuUCCCCu -3'
miRNA:   3'- uCugGUCGUGGucCCCCCg--UC----------AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.