miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 42850 0.67 0.567793
Target:  5'- gAGACCAGCuuuCCAGGGGauacacacacGGC-GUUUUCa -3'
miRNA:   3'- -UCUGGUCGu--GGUCCCC----------CCGuCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 46364 0.68 0.543117
Target:  5'- gGGGCgCGGCGCCGcaucggccgcGGGGcaccagaugcgccgcGGCGGcCCCCu -3'
miRNA:   3'- -UCUG-GUCGUGGU----------CCCC---------------CCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 47733 0.67 0.557314
Target:  5'- uAGACCcagggauAGC-UCAGGGGGGUc--CCCCa -3'
miRNA:   3'- -UCUGG-------UCGuGGUCCCCCCGucaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 48490 0.67 0.555415
Target:  5'- -cACCAGCuuggcccuguggGCUAGGGGGcuagccgccuggaaGCAGcCCCCc -3'
miRNA:   3'- ucUGGUCG------------UGGUCCCCC--------------CGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 49498 0.72 0.337636
Target:  5'- uGGCCAGCuCCAGgcccGGGGGCAG-CUCg -3'
miRNA:   3'- uCUGGUCGuGGUC----CCCCCGUCaGGGg -5'
3614 3' -62.8 NC_001650.1 + 50653 0.68 0.511408
Target:  5'- gGGGCCGGUGCCcgcGGGGGGCcugaCCUu -3'
miRNA:   3'- -UCUGGUCGUGGu--CCCCCCGucagGGG- -5'
3614 3' -62.8 NC_001650.1 + 51305 0.66 0.644021
Target:  5'- cGGcCCAGCACCAGGGgcugaacagguacGGGUuGUaCCUg -3'
miRNA:   3'- -UCuGGUCGUGGUCCC-------------CCCGuCA-GGGg -5'
3614 3' -62.8 NC_001650.1 + 52703 0.7 0.431679
Target:  5'- cGGGCCgcAGCGgggagacgguCCAGGGGgccacgguGGCGGUCUCCc -3'
miRNA:   3'- -UCUGG--UCGU----------GGUCCCC--------CCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 52937 0.72 0.309782
Target:  5'- --cCCGGCGCCcGGaGGGGCcgggGGUUCCCa -3'
miRNA:   3'- ucuGGUCGUGGuCC-CCCCG----UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 53046 0.66 0.664329
Target:  5'- -cGCCcGCucCCAGGGcGGGCAGggCgCCg -3'
miRNA:   3'- ucUGGuCGu-GGUCCC-CCCGUCa-GgGG- -5'
3614 3' -62.8 NC_001650.1 + 56274 0.68 0.511408
Target:  5'- uGGGCgaAGgACgGGGGGGGUGGUgCCUg -3'
miRNA:   3'- -UCUGg-UCgUGgUCCCCCCGUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 58442 0.66 0.64499
Target:  5'- aAGGCCAGCGuCCA--GGGGCuGcCCgCCa -3'
miRNA:   3'- -UCUGGUCGU-GGUccCCCCGuCaGG-GG- -5'
3614 3' -62.8 NC_001650.1 + 58625 0.66 0.673967
Target:  5'- gAGAggGGCGCCAucGcGGaGGGCuacgcGUCCCCg -3'
miRNA:   3'- -UCUggUCGUGGU--C-CC-CCCGu----CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 58627 0.69 0.4698
Target:  5'- uGugCAGCAUCuccagggugggguuGGGGGGCAGguggugguccgCCCUg -3'
miRNA:   3'- uCugGUCGUGGu-------------CCCCCCGUCa----------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 58764 0.71 0.374951
Target:  5'- uGcCCGGgGCCAaGGGGGGCGacacCCCCa -3'
miRNA:   3'- uCuGGUCgUGGU-CCCCCCGUca--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 59746 0.67 0.606255
Target:  5'- gGGGCCcguGGC-CCccGGGGGCgAGgcgCCCCc -3'
miRNA:   3'- -UCUGG---UCGuGGucCCCCCG-UCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 59964 0.68 0.520659
Target:  5'- cAGGCCccGCuCCAGGGucagccgcaGGGCGGUcugggCCCCg -3'
miRNA:   3'- -UCUGGu-CGuGGUCCC---------CCCGUCA-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 59979 0.7 0.406749
Target:  5'- uAGuCCAGCGuguCCGuGGGGGGCGccucGcCCCCg -3'
miRNA:   3'- -UCuGGUCGU---GGU-CCCCCCGU----CaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 60616 0.71 0.367269
Target:  5'- gGGGCguaGGCGCCcugccgguugAGGGGGGCcaccGUCUCCa -3'
miRNA:   3'- -UCUGg--UCGUGG----------UCCCCCCGu---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 60997 0.67 0.567793
Target:  5'- uGGCCGcGUACCAGGGcccguagaaGGGCAG-CCaCUg -3'
miRNA:   3'- uCUGGU-CGUGGUCCC---------CCCGUCaGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.