miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 61338 0.7 0.431679
Target:  5'- gGGACCcgggGGCGgCGGGGGaGGCgAGcUCCUCa -3'
miRNA:   3'- -UCUGG----UCGUgGUCCCC-CCG-UC-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 62880 0.69 0.448787
Target:  5'- gGGGCUccggAGCACCcGGGGGcGCGacCCCCa -3'
miRNA:   3'- -UCUGG----UCGUGGuCCCCC-CGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 65871 0.68 0.511408
Target:  5'- gAGACCGGCAgCAGGuuaaaGGuGGCcacgugccuGUCCCUg -3'
miRNA:   3'- -UCUGGUCGUgGUCC-----CC-CCGu--------CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 67314 0.75 0.210953
Target:  5'- aAGAgCAGgGgCAGGGGcacgucgcugucGGCGGUCCCCa -3'
miRNA:   3'- -UCUgGUCgUgGUCCCC------------CCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 68664 0.67 0.586965
Target:  5'- gGGGCgaAGCugucuGCCAGGGGGcGCcGUCUCUc -3'
miRNA:   3'- -UCUGg-UCG-----UGGUCCCCC-CGuCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 68792 0.7 0.398642
Target:  5'- gAGACCAGUgcguggggcagGCCGGGgcccucgcucgaGGGGCGGggcgCCUCg -3'
miRNA:   3'- -UCUGGUCG-----------UGGUCC------------CCCCGUCa---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 71056 0.67 0.615929
Target:  5'- uGGGCCAGCAgaaCAGGauGGCcaUCCCCu -3'
miRNA:   3'- -UCUGGUCGUg--GUCCccCCGucAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 71244 0.67 0.615929
Target:  5'- -aACguG-AUCAGGGGGGCGGagaaCCCCc -3'
miRNA:   3'- ucUGguCgUGGUCCCCCCGUCa---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 71981 0.77 0.162499
Target:  5'- -uGCCAGCACCuGGGcGGGGCGgccGUCUCCa -3'
miRNA:   3'- ucUGGUCGUGG-UCC-CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 72274 0.67 0.586004
Target:  5'- uGGCCAGCcaccuugACCAGGGccugcuccaGGGCcacuaucUCCCCg -3'
miRNA:   3'- uCUGGUCG-------UGGUCCC---------CCCGuc-----AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 75413 0.66 0.660467
Target:  5'- gAGACCcgaucuAGC-UCAGGGGGGCGGgcgaggaagcgagCgCCg -3'
miRNA:   3'- -UCUGG------UCGuGGUCCCCCCGUCa------------GgGG- -5'
3614 3' -62.8 NC_001650.1 + 77170 0.68 0.548782
Target:  5'- gAGGCCucgGGCACgGGcauGGGGGCgguGGUCUCUa -3'
miRNA:   3'- -UCUGG---UCGUGgUC---CCCCCG---UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 79008 0.71 0.390639
Target:  5'- aGGGCCgAGCGCCGGucgcGGcGGCGaucucGUCCCCg -3'
miRNA:   3'- -UCUGG-UCGUGGUCc---CC-CCGU-----CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 79115 0.68 0.520659
Target:  5'- cGGCgGGCGggAGGaGGGcCAGUCCCCu -3'
miRNA:   3'- uCUGgUCGUggUCCcCCC-GUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 82661 0.69 0.45748
Target:  5'- aAGAgCAGcCACaugAGGGGcaGGgGGUCCCCa -3'
miRNA:   3'- -UCUgGUC-GUGg--UCCCC--CCgUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 82744 0.67 0.615929
Target:  5'- uGGgCAGCAgCAGGGGGcccgGGUgCCCg -3'
miRNA:   3'- uCUgGUCGUgGUCCCCCcg--UCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 82979 0.67 0.587927
Target:  5'- gGGACCAGCagagggaccucaucGCCAGGGGGcuggaggcggagGUgaacaagcgggccgcGGUCUCCc -3'
miRNA:   3'- -UCUGGUCG--------------UGGUCCCCC------------CG---------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 83213 0.68 0.520659
Target:  5'- uGuCCaAGCugaaCAGGGGGGCGGUCgCg -3'
miRNA:   3'- uCuGG-UCGug--GUCCCCCCGUCAGgGg -5'
3614 3' -62.8 NC_001650.1 + 84029 0.7 0.398642
Target:  5'- -aGCCAGCgACCAGGGGaGGgauguucuCGGggCCCCa -3'
miRNA:   3'- ucUGGUCG-UGGUCCCC-CC--------GUCa-GGGG- -5'
3614 3' -62.8 NC_001650.1 + 85093 0.66 0.64499
Target:  5'- gAGGCCAuCACCc-GGGGGCAGUacgagaacaaCCUg -3'
miRNA:   3'- -UCUGGUcGUGGucCCCCCGUCAg---------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.