miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 132810 0.66 0.673967
Target:  5'- gGGGCCAGCGCCuccGcGGGcCAGUUCUUg -3'
miRNA:   3'- -UCUGGUCGUGGuccC-CCC-GUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 132769 0.7 0.423269
Target:  5'- -cGCCAGCuCCAccGGGGGCGcGUCgCCCg -3'
miRNA:   3'- ucUGGUCGuGGUc-CCCCCGU-CAG-GGG- -5'
3614 3' -62.8 NC_001650.1 + 132333 0.68 0.527173
Target:  5'- gGGugUAGUagcuGCCGGuGGGcGGCccguagggguagggGGUCCCCg -3'
miRNA:   3'- -UCugGUCG----UGGUC-CCC-CCG--------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 132197 0.68 0.511408
Target:  5'- gAGGCCcauGU-CCAGcGGGGGCAGcgugCUCCa -3'
miRNA:   3'- -UCUGGu--CGuGGUC-CCCCCGUCa---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 131907 0.68 0.511408
Target:  5'- aGGACgGGCggGCCAGGGcGGGCu-UCCUg -3'
miRNA:   3'- -UCUGgUCG--UGGUCCC-CCCGucAGGGg -5'
3614 3' -62.8 NC_001650.1 + 131424 0.73 0.296525
Target:  5'- gGGACCGGguCCAcGGaGGGCcuGGUCUCCa -3'
miRNA:   3'- -UCUGGUCguGGUcCC-CCCG--UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 130860 0.66 0.64499
Target:  5'- gAGGCCAagACC-GGGGGGCuGgacaagagcgCCCCc -3'
miRNA:   3'- -UCUGGUcgUGGuCCCCCCGuCa---------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 130816 0.67 0.596598
Target:  5'- cGGACCuGGCGguccuCCAGGaGGaGGCGGccgCCCUg -3'
miRNA:   3'- -UCUGG-UCGU-----GGUCC-CC-CCGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 130176 0.67 0.615929
Target:  5'- aGGGCCcGCGCCAcGGgcgccuccaGGGGC-GUgCCCg -3'
miRNA:   3'- -UCUGGuCGUGGU-CC---------CCCCGuCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 130034 0.67 0.567793
Target:  5'- aGGGCCAGaucgACgAGGGGGaGCGGgCCUa -3'
miRNA:   3'- -UCUGGUCg---UGgUCCCCC-CGUCaGGGg -5'
3614 3' -62.8 NC_001650.1 + 129180 0.67 0.606255
Target:  5'- -cGCCGGUgGCCAGGuGGGGac-UCCCCc -3'
miRNA:   3'- ucUGGUCG-UGGUCC-CCCCgucAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 128951 0.73 0.290064
Target:  5'- aAGAUCgAGCAgauCCucGGGGGgAGUCCCCa -3'
miRNA:   3'- -UCUGG-UCGU---GGucCCCCCgUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 128261 0.66 0.625613
Target:  5'- cGGGCCcGUGCCcGaGGGGGUGGggCCCa -3'
miRNA:   3'- -UCUGGuCGUGGuC-CCCCCGUCagGGG- -5'
3614 3' -62.8 NC_001650.1 + 127395 0.67 0.586965
Target:  5'- gAGACCGGgGCCGauGGGGGGUuggCCa- -3'
miRNA:   3'- -UCUGGUCgUGGU--CCCCCCGucaGGgg -5'
3614 3' -62.8 NC_001650.1 + 124771 0.69 0.484084
Target:  5'- gGGACgGGCGC--GGGGGGCcGUCUgCa -3'
miRNA:   3'- -UCUGgUCGUGguCCCCCCGuCAGGgG- -5'
3614 3' -62.8 NC_001650.1 + 123592 0.74 0.25941
Target:  5'- uGugCuGCGCCAGGGGGGCuccauagCgCCCg -3'
miRNA:   3'- uCugGuCGUGGUCCCCCCGuca----G-GGG- -5'
3614 3' -62.8 NC_001650.1 + 122283 0.7 0.431679
Target:  5'- uAGGCCAGggUCAGGGGGcGCcugaugugggccAG-CCCCg -3'
miRNA:   3'- -UCUGGUCguGGUCCCCC-CG------------UCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 121574 0.67 0.606255
Target:  5'- uGGCCAGCAUgguggagaAGGGuGGCAGgCCUCg -3'
miRNA:   3'- uCUGGUCGUGg-------UCCCcCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 121206 0.68 0.520659
Target:  5'- uGGCCAGgGgCAGGGugaGGGaGGUCUCCg -3'
miRNA:   3'- uCUGGUCgUgGUCCC---CCCgUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 121017 0.67 0.558264
Target:  5'- uGGGCUugGGCAgggagaccUCGGGGGGcGCGGUCCa- -3'
miRNA:   3'- -UCUGG--UCGU--------GGUCCCCC-CGUCAGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.