miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 23768 0.7 0.423269
Target:  5'- gAGACCcGC-CCgAGGGGGGCgcugacaucaAGUCCUUu -3'
miRNA:   3'- -UCUGGuCGuGG-UCCCCCCG----------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 3981 0.72 0.321402
Target:  5'- aGGGgUGGCGCCGGGGcGGaGCucgcccacggacagAGUCCCCa -3'
miRNA:   3'- -UCUgGUCGUGGUCCC-CC-CG--------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 95394 0.72 0.323486
Target:  5'- aAGGCCAGUugUAGGGuGGGU--UCCCg -3'
miRNA:   3'- -UCUGGUCGugGUCCC-CCCGucAGGGg -5'
3614 3' -62.8 NC_001650.1 + 60616 0.71 0.367269
Target:  5'- gGGGCguaGGCGCCcugccgguugAGGGGGGCcaccGUCUCCa -3'
miRNA:   3'- -UCUGg--UCGUGG----------UCCCCCCGu---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 68792 0.7 0.398642
Target:  5'- gAGACCAGUgcguggggcagGCCGGGgcccucgcucgaGGGGCGGggcgCCUCg -3'
miRNA:   3'- -UCUGGUCG-----------UGGUCC------------CCCCGUCa---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 156815 0.7 0.398642
Target:  5'- uGGCCgGGCACCGGGcGucuGGCAGcagCCCCg -3'
miRNA:   3'- uCUGG-UCGUGGUCC-Cc--CCGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 141926 0.7 0.406749
Target:  5'- gGGAgCCuuccucGCGgCAGGGGGGCAaaCCCCc -3'
miRNA:   3'- -UCU-GGu-----CGUgGUCCCCCCGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 2912 0.7 0.423269
Target:  5'- -uAUUGGC-CCAGGGGGGCuGUCCa- -3'
miRNA:   3'- ucUGGUCGuGGUCCCCCCGuCAGGgg -5'
3614 3' -62.8 NC_001650.1 + 169619 0.7 0.423269
Target:  5'- -uAUUGGC-CCAGGGGGGCuGUCCa- -3'
miRNA:   3'- ucUGGUCGuGGUCCCCCCGuCAGGgg -5'
3614 3' -62.8 NC_001650.1 + 5921 0.72 0.316578
Target:  5'- -aACCAGgGCCuucauuggccauGGGGuugaguGGGCAGUCCCCc -3'
miRNA:   3'- ucUGGUCgUGG------------UCCC------CCCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 52937 0.72 0.309782
Target:  5'- --cCCGGCGCCcGGaGGGGCcgggGGUUCCCa -3'
miRNA:   3'- ucuGGUCGUGGuCC-CCCCG----UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 142735 0.72 0.302436
Target:  5'- gAGACCAgGCGCCcGGaguuugcGGaGGCGGUCUCCa -3'
miRNA:   3'- -UCUGGU-CGUGGuCC-------CC-CCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 157280 0.77 0.147516
Target:  5'- uAGcCCAuGCGCCuGGGGGGCAccUCCCCg -3'
miRNA:   3'- -UCuGGU-CGUGGuCCCCCCGUc-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 71981 0.77 0.162499
Target:  5'- -uGCCAGCACCuGGGcGGGGCGgccGUCUCCa -3'
miRNA:   3'- ucUGGUCGUGG-UCC-CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 27211 0.77 0.166454
Target:  5'- cGACCGGC-CaCAGGGGGGCGGgcgacugcagCCUCa -3'
miRNA:   3'- uCUGGUCGuG-GUCCCCCCGUCa---------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 67314 0.75 0.210953
Target:  5'- aAGAgCAGgGgCAGGGGcacgucgcugucGGCGGUCCCCa -3'
miRNA:   3'- -UCUgGUCgUgGUCCCC------------CCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 123592 0.74 0.25941
Target:  5'- uGugCuGCGCCAGGGGGGCuccauagCgCCCg -3'
miRNA:   3'- uCugGuCGUGGUCCCCCCGuca----G-GGG- -5'
3614 3' -62.8 NC_001650.1 + 35808 0.73 0.265323
Target:  5'- cGGCCGucccGCGCCAGGGGGGCgcggccagGGaCUCCu -3'
miRNA:   3'- uCUGGU----CGUGGUCCCCCCG--------UCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 128951 0.73 0.290064
Target:  5'- aAGAUCgAGCAgauCCucGGGGGgAGUCCCCa -3'
miRNA:   3'- -UCUGG-UCGU---GGucCCCCCgUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 172628 0.73 0.290064
Target:  5'- -aACCAGgGCCuucauuggccauGGGGugaguGGGCAGUCCCCc -3'
miRNA:   3'- ucUGGUCgUGG------------UCCC-----CCCGUCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.