miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 169619 0.7 0.423269
Target:  5'- -uAUUGGC-CCAGGGGGGCuGUCCa- -3'
miRNA:   3'- ucUGGUCGuGGUCCCCCCGuCAGGgg -5'
3614 3' -62.8 NC_001650.1 + 23768 0.7 0.423269
Target:  5'- gAGACCcGC-CCgAGGGGGGCgcugacaucaAGUCCUUu -3'
miRNA:   3'- -UCUGGuCGuGG-UCCCCCCG----------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 181761 0.69 0.466262
Target:  5'- -uGCCAGCgggccGCUGGGGGGGaAGggacggCCCCg -3'
miRNA:   3'- ucUGGUCG-----UGGUCCCCCCgUCa-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 58627 0.69 0.4698
Target:  5'- uGugCAGCAUCuccagggugggguuGGGGGGCAGguggugguccgCCCUg -3'
miRNA:   3'- uCugGUCGUGGu-------------CCCCCCGUCa----------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 23495 0.69 0.475132
Target:  5'- uGugCAGCGCCcuGGGGGagaAGaacucggucuUCCCCu -3'
miRNA:   3'- uCugGUCGUGGucCCCCCg--UC----------AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 142955 0.69 0.475132
Target:  5'- cAGACCGGUGCCAGGGGccauGCAuGcUCUCUc -3'
miRNA:   3'- -UCUGGUCGUGGUCCCCc---CGU-C-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 133904 0.69 0.484084
Target:  5'- gGGACCgcGGCGcCCAGaguacagcuGGGGGCGccCCCCa -3'
miRNA:   3'- -UCUGG--UCGU-GGUC---------CCCCCGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 22350 0.69 0.484084
Target:  5'- uGGGCCuGCACCuGGGGGuggugggcaGCGGggaggaCCCg -3'
miRNA:   3'- -UCUGGuCGUGGuCCCCC---------CGUCag----GGG- -5'
3614 3' -62.8 NC_001650.1 + 124771 0.69 0.484084
Target:  5'- gGGACgGGCGC--GGGGGGCcGUCUgCa -3'
miRNA:   3'- -UCUGgUCGUGguCCCCCCGuCAGGgG- -5'
3614 3' -62.8 NC_001650.1 + 21664 0.68 0.502226
Target:  5'- uGACCAGCggggacgacgGCgCGGGGGGGCccugcaCCCUg -3'
miRNA:   3'- uCUGGUCG----------UG-GUCCCCCCGuca---GGGG- -5'
3614 3' -62.8 NC_001650.1 + 15054 0.69 0.466262
Target:  5'- -uGCCAGCgggccGCUGGGGGGGaAGggacggCCCCg -3'
miRNA:   3'- ucUGGUCG-----UGGUCCCCCCgUCa-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 171067 0.69 0.466262
Target:  5'- uGGCCAGagaugacguGCCAGGcauGGGGCAaucGUCCUCg -3'
miRNA:   3'- uCUGGUCg--------UGGUCC---CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 134146 0.7 0.423269
Target:  5'- cGACCAG-ACCaAGGGggcgaccgcGGGCGGcccUCCCCa -3'
miRNA:   3'- uCUGGUCgUGG-UCCC---------CCCGUC---AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 52703 0.7 0.431679
Target:  5'- cGGGCCgcAGCGgggagacgguCCAGGGGgccacgguGGCGGUCUCCc -3'
miRNA:   3'- -UCUGG--UCGU----------GGUCCCC--------CCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 29373 0.7 0.440185
Target:  5'- cAGGCgCAGCGuCCAGGGGgcGGCGGUggCCu -3'
miRNA:   3'- -UCUG-GUCGU-GGUCCCC--CCGUCAggGG- -5'
3614 3' -62.8 NC_001650.1 + 62880 0.69 0.448787
Target:  5'- gGGGCUccggAGCACCcGGGGGcGCGacCCCCa -3'
miRNA:   3'- -UCUGG----UCGUGGuCCCCC-CGUcaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 102472 0.69 0.448787
Target:  5'- cAGGCC-GC-CCAGGaGGuGGCGGUaCCCa -3'
miRNA:   3'- -UCUGGuCGuGGUCC-CC-CCGUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 88607 0.69 0.45748
Target:  5'- uGAUCAGgacgGCCAGGGGGGUcuacuccugCCCCg -3'
miRNA:   3'- uCUGGUCg---UGGUCCCCCCGuca------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 93345 0.69 0.45748
Target:  5'- gGGGCCAGUACgAGcaccugacGGGGGCGG-CCUUu -3'
miRNA:   3'- -UCUGGUCGUGgUC--------CCCCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 4360 0.69 0.466262
Target:  5'- uGGCCAGagaugacguGCCAGGcauGGGGCAaucGUCCUCg -3'
miRNA:   3'- uCUGGUCg--------UGGUCC---CCCCGU---CAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.