miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 32247 1.1 0.000702
Target:  5'- aAGACCAGCACCAGGGGGGCAGUCCCCu -3'
miRNA:   3'- -UCUGGUCGUGGUCCCCCCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 132769 0.7 0.423269
Target:  5'- -cGCCAGCuCCAccGGGGGCGcGUCgCCCg -3'
miRNA:   3'- ucUGGUCGuGGUc-CCCCCGU-CAG-GGG- -5'
3614 3' -62.8 NC_001650.1 + 28065 0.7 0.431679
Target:  5'- uGACCgaGGcCACCacGGGGGGGaaccuGUCCCUg -3'
miRNA:   3'- uCUGG--UC-GUGG--UCCCCCCgu---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 132810 0.66 0.673967
Target:  5'- gGGGCCAGCGCCuccGcGGGcCAGUUCUUg -3'
miRNA:   3'- -UCUGGUCGUGGuccC-CCC-GUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 134534 0.72 0.316578
Target:  5'- aGGGCCccggggGGCGCCGGGGGGGaagacgggUAGUCuggCCCu -3'
miRNA:   3'- -UCUGG------UCGUGGUCCCCCC--------GUCAG---GGG- -5'
3614 3' -62.8 NC_001650.1 + 23646 0.72 0.323486
Target:  5'- cAGucauCCGGCACCuGGGGGGUc-UCCCa -3'
miRNA:   3'- -UCu---GGUCGUGGuCCCCCCGucAGGGg -5'
3614 3' -62.8 NC_001650.1 + 49498 0.72 0.337636
Target:  5'- uGGCCAGCuCCAGgcccGGGGGCAG-CUCg -3'
miRNA:   3'- uCUGGUCGuGGUC----CCCCCGUCaGGGg -5'
3614 3' -62.8 NC_001650.1 + 110882 0.71 0.344149
Target:  5'- cGGuCCGGCAUCgcccgAGGGGGcGCgugcgcggggacgGGUCCCCg -3'
miRNA:   3'- -UCuGGUCGUGG-----UCCCCC-CG-------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 58764 0.71 0.374951
Target:  5'- uGcCCGGgGCCAaGGGGGGCGacacCCCCa -3'
miRNA:   3'- uCuGGUCgUGGU-CCCCCCGUca--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 158857 0.7 0.414958
Target:  5'- uGGACCcccguAGcCGCCuggagggaGGGGGGGacaGGUCCCUg -3'
miRNA:   3'- -UCUGG-----UC-GUGG--------UCCCCCCg--UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 84029 0.7 0.398642
Target:  5'- -aGCCAGCgACCAGGGGaGGgauguucuCGGggCCCCa -3'
miRNA:   3'- ucUGGUCG-UGGUCCCC-CC--------GUCa-GGGG- -5'
3614 3' -62.8 NC_001650.1 + 134619 0.71 0.367269
Target:  5'- aGGGCCuccuccaCAUCGGuggucgggcucuGGGGGUAGUCCCCg -3'
miRNA:   3'- -UCUGGuc-----GUGGUC------------CCCCCGUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 89955 0.74 0.231453
Target:  5'- -cACCAGCcCCAcgcaaggcGGGGGGUGGUCuCCCa -3'
miRNA:   3'- ucUGGUCGuGGU--------CCCCCCGUCAG-GGG- -5'
3614 3' -62.8 NC_001650.1 + 36740 0.7 0.398642
Target:  5'- aGGuCCAGCACCAGGGcGaauccuugacGCAGUacagCCCCa -3'
miRNA:   3'- -UCuGGUCGUGGUCCCcC----------CGUCA----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 131424 0.73 0.296525
Target:  5'- gGGACCGGguCCAcGGaGGGCcuGGUCUCCa -3'
miRNA:   3'- -UCUGGUCguGGUcCC-CCCG--UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 21917 0.71 0.352232
Target:  5'- -cGCCuGCAUCAuGGGGGCGacGUCCCUg -3'
miRNA:   3'- ucUGGuCGUGGUcCCCCCGU--CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 59979 0.7 0.406749
Target:  5'- uAGuCCAGCGuguCCGuGGGGGGCGccucGcCCCCg -3'
miRNA:   3'- -UCuGGUCGU---GGU-CCCCCCGU----CaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 164896 0.7 0.430834
Target:  5'- uGugCAGCGgcgcgagUCGGGGGGGUugagcgccgcGGUCCCa -3'
miRNA:   3'- uCugGUCGU-------GGUCCCCCCG----------UCAGGGg -5'
3614 3' -62.8 NC_001650.1 + 117697 0.73 0.296525
Target:  5'- aGGGCCAGUaACCAgcuggugacgguGGGGGGCGcUCCgCCg -3'
miRNA:   3'- -UCUGGUCG-UGGU------------CCCCCCGUcAGG-GG- -5'
3614 3' -62.8 NC_001650.1 + 157737 0.72 0.323486
Target:  5'- cAGAUUAGgGgCAGGGGGGU-GUCCCg -3'
miRNA:   3'- -UCUGGUCgUgGUCCCCCCGuCAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.