Results 21 - 40 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3614 | 3' | -62.8 | NC_001650.1 | + | 61338 | 0.7 | 0.431679 |
Target: 5'- gGGACCcgggGGCGgCGGGGGaGGCgAGcUCCUCa -3' miRNA: 3'- -UCUGG----UCGUgGUCCCC-CCG-UC-AGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 28065 | 0.7 | 0.431679 |
Target: 5'- uGACCgaGGcCACCacGGGGGGGaaccuGUCCCUg -3' miRNA: 3'- uCUGG--UC-GUGG--UCCCCCCgu---CAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 134619 | 0.71 | 0.367269 |
Target: 5'- aGGGCCuccuccaCAUCGGuggucgggcucuGGGGGUAGUCCCCg -3' miRNA: 3'- -UCUGGuc-----GUGGUC------------CCCCCGUCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 117697 | 0.73 | 0.296525 |
Target: 5'- aGGGCCAGUaACCAgcuggugacgguGGGGGGCGcUCCgCCg -3' miRNA: 3'- -UCUGGUCG-UGGU------------CCCCCCGUcAGG-GG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 132333 | 0.68 | 0.527173 |
Target: 5'- gGGugUAGUagcuGCCGGuGGGcGGCccguagggguagggGGUCCCCg -3' miRNA: 3'- -UCugGUCG----UGGUC-CCC-CCG--------------UCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 14140 | 0.69 | 0.466262 |
Target: 5'- gGGGCUccauggucccggGGguCCAGGGGGGCGccucUCUCCg -3' miRNA: 3'- -UCUGG------------UCguGGUCCCCCCGUc---AGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 132769 | 0.7 | 0.423269 |
Target: 5'- -cGCCAGCuCCAccGGGGGCGcGUCgCCCg -3' miRNA: 3'- ucUGGUCGuGGUc-CCCCCGU-CAG-GGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 131424 | 0.73 | 0.296525 |
Target: 5'- gGGACCGGguCCAcGGaGGGCcuGGUCUCCa -3' miRNA: 3'- -UCUGGUCguGGUcCC-CCCG--UCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 180847 | 0.69 | 0.466262 |
Target: 5'- gGGGCUccauggucccggGGguCCAGGGGGGCGccucUCUCCg -3' miRNA: 3'- -UCUGG------------UCguGGUCCCCCCGUc---AGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 89955 | 0.74 | 0.231453 |
Target: 5'- -cACCAGCcCCAcgcaaggcGGGGGGUGGUCuCCCa -3' miRNA: 3'- ucUGGUCGuGGU--------CCCCCCGUCAG-GGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 164896 | 0.7 | 0.430834 |
Target: 5'- uGugCAGCGgcgcgagUCGGGGGGGUugagcgccgcGGUCCCa -3' miRNA: 3'- uCugGUCGU-------GGUCCCCCCG----------UCAGGGg -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 89528 | 0.7 | 0.440185 |
Target: 5'- cGGGCCAGguCCAGGGucagcaGGGCGugcgCCCUc -3' miRNA: 3'- -UCUGGUCguGGUCCC------CCCGUca--GGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 36740 | 0.7 | 0.398642 |
Target: 5'- aGGuCCAGCACCAGGGcGaauccuugacGCAGUacagCCCCa -3' miRNA: 3'- -UCuGGUCGUGGUCCCcC----------CGUCA----GGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 58764 | 0.71 | 0.374951 |
Target: 5'- uGcCCGGgGCCAaGGGGGGCGacacCCCCa -3' miRNA: 3'- uCuGGUCgUGGU-CCCCCCGUca--GGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 49498 | 0.72 | 0.337636 |
Target: 5'- uGGCCAGCuCCAGgcccGGGGGCAG-CUCg -3' miRNA: 3'- uCUGGUCGuGGUC----CCCCCGUCaGGGg -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 134534 | 0.72 | 0.316578 |
Target: 5'- aGGGCCccggggGGCGCCGGGGGGGaagacgggUAGUCuggCCCu -3' miRNA: 3'- -UCUGG------UCGUGGUCCCCCC--------GUCAG---GGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 29670 | 0.68 | 0.548782 |
Target: 5'- aGGACCAcGUcccugAUCAcGuGGGGGUuGUCCCCg -3' miRNA: 3'- -UCUGGU-CG-----UGGU-C-CCCCCGuCAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 133514 | 0.68 | 0.529975 |
Target: 5'- cGcCCGGCGCCuccuGGGCAGcCCCCu -3' miRNA: 3'- uCuGGUCGUGGucccCCCGUCaGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 180563 | 0.68 | 0.520659 |
Target: 5'- --uUCAGgGCCAGGGucuGGCAgcGUCCCCc -3' miRNA: 3'- ucuGGUCgUGGUCCCc--CCGU--CAGGGG- -5' |
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3614 | 3' | -62.8 | NC_001650.1 | + | 157513 | 0.68 | 0.511408 |
Target: 5'- cGACCugGGCGagGGcGGGGGCGGggaggugCCCCc -3' miRNA: 3'- uCUGG--UCGUggUC-CCCCCGUCa------GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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