miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 58625 0.66 0.673967
Target:  5'- gAGAggGGCGCCAucGcGGaGGGCuacgcGUCCCCg -3'
miRNA:   3'- -UCUggUCGUGGU--C-CC-CCCGu----CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 144140 0.66 0.635303
Target:  5'- gGGA-CAGCACCAGGcaccugcccGGGGCGaUCUCg -3'
miRNA:   3'- -UCUgGUCGUGGUCC---------CCCCGUcAGGGg -5'
3614 3' -62.8 NC_001650.1 + 23646 0.72 0.323486
Target:  5'- cAGucauCCGGCACCuGGGGGGUc-UCCCa -3'
miRNA:   3'- -UCu---GGUCGUGGuCCCCCCGucAGGGg -5'
3614 3' -62.8 NC_001650.1 + 110882 0.71 0.344149
Target:  5'- cGGuCCGGCAUCgcccgAGGGGGcGCgugcgcggggacgGGUCCCCg -3'
miRNA:   3'- -UCuGGUCGUGG-----UCCCCC-CG-------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 79008 0.71 0.390639
Target:  5'- aGGGCCgAGCGCCGGucgcGGcGGCGaucucGUCCCCg -3'
miRNA:   3'- -UCUGG-UCGUGGUCc---CC-CCGU-----CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 59979 0.7 0.406749
Target:  5'- uAGuCCAGCGuguCCGuGGGGGGCGccucGcCCCCg -3'
miRNA:   3'- -UCuGGUCGU---GGU-CCCCCCGU----CaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 122283 0.7 0.431679
Target:  5'- uAGGCCAGggUCAGGGGGcGCcugaugugggccAG-CCCCg -3'
miRNA:   3'- -UCUGGUCguGGUCCCCC-CG------------UCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 89528 0.7 0.440185
Target:  5'- cGGGCCAGguCCAGGGucagcaGGGCGugcgCCCUc -3'
miRNA:   3'- -UCUGGUCguGGUCCC------CCCGUca--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 14140 0.69 0.466262
Target:  5'- gGGGCUccauggucccggGGguCCAGGGGGGCGccucUCUCCg -3'
miRNA:   3'- -UCUGG------------UCguGGUCCCCCCGUc---AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 111497 0.66 0.673005
Target:  5'- cGGCgGGCACUguuGGGGcGGGCAcugcugcgggcgaGgCCCCa -3'
miRNA:   3'- uCUGgUCGUGG---UCCC-CCCGU-------------CaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 65871 0.68 0.511408
Target:  5'- gAGACCGGCAgCAGGuuaaaGGuGGCcacgugccuGUCCCUg -3'
miRNA:   3'- -UCUGGUCGUgGUCC-----CC-CCGu--------CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 88953 0.67 0.576403
Target:  5'- cGGCCuGCcccgcuuGCCGGccGGGGGCu-UCCCCg -3'
miRNA:   3'- uCUGGuCG-------UGGUC--CCCCCGucAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 127395 0.67 0.586965
Target:  5'- gAGACCGGgGCCGauGGGGGGUuggCCa- -3'
miRNA:   3'- -UCUGGUCgUGGU--CCCCCCGucaGGgg -5'
3614 3' -62.8 NC_001650.1 + 102460 0.67 0.613025
Target:  5'- cAGcACCuGCGCCGGcugcgccgucugguGGGaGGCGGcUCCCUg -3'
miRNA:   3'- -UC-UGGuCGUGGUC--------------CCC-CCGUC-AGGGG- -5'
3614 3' -62.8 NC_001650.1 + 167540 0.66 0.625613
Target:  5'- gAGACCgaccaaugggGGC-CCGGGGGagggcGGCAG-CCCg -3'
miRNA:   3'- -UCUGG----------UCGuGGUCCCC-----CCGUCaGGGg -5'
3614 3' -62.8 NC_001650.1 + 95710 0.66 0.635303
Target:  5'- gGGugCgGGCGCCGGGgaGGGGgAG-CCUCu -3'
miRNA:   3'- -UCugG-UCGUGGUCC--CCCCgUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 117253 0.66 0.64499
Target:  5'- aGGAUCAGaucCgCAGGGcGGCggccaGGUCCCCg -3'
miRNA:   3'- -UCUGGUCgu-G-GUCCCcCCG-----UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 141869 0.66 0.663364
Target:  5'- aGGGCCucGGgGCCuGGGGGuguuuugcuucgcGCGGgggCCCCc -3'
miRNA:   3'- -UCUGG--UCgUGGuCCCCC-------------CGUCa--GGGG- -5'
3614 3' -62.8 NC_001650.1 + 94996 0.67 0.596598
Target:  5'- uGACCAuaGCCaAGGcccaGGGCAuGUCCCUg -3'
miRNA:   3'- uCUGGUcgUGG-UCCc---CCCGU-CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 23929 0.67 0.593706
Target:  5'- -uACCAGCAggUCAGGGGccagaagaguacacGG-GGUCCCCg -3'
miRNA:   3'- ucUGGUCGU--GGUCCCC--------------CCgUCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.