miRNA display CGI


Results 81 - 100 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 3' -62.8 NC_001650.1 + 155737 0.68 0.542174
Target:  5'- cGugCAGCgcgGCCAGGGgcucggugcagccGGGCAGgcacagcacggccgCCCCc -3'
miRNA:   3'- uCugGUCG---UGGUCCC-------------CCCGUCa-------------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 89199 0.68 0.545003
Target:  5'- gAGAUCgugaGGCggGCCAGGGcGGGCGGcggcaacugcuggCCCCu -3'
miRNA:   3'- -UCUGG----UCG--UGGUCCC-CCCGUCa------------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 46364 0.68 0.543117
Target:  5'- gGGGCgCGGCGCCGcaucggccgcGGGGcaccagaugcgccgcGGCGGcCCCCu -3'
miRNA:   3'- -UCUG-GUCGUGGU----------CCCC---------------CCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 35808 0.73 0.265323
Target:  5'- cGGCCGucccGCGCCAGGGGGGCgcggccagGGaCUCCu -3'
miRNA:   3'- uCUGGU----CGUGGUCCCCCCG--------UCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 60616 0.71 0.367269
Target:  5'- gGGGCguaGGCGCCcugccgguugAGGGGGGCcaccGUCUCCa -3'
miRNA:   3'- -UCUGg--UCGUGG----------UCCCCCCGu---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 60997 0.67 0.567793
Target:  5'- uGGCCGcGUACCAGGGcccguagaaGGGCAG-CCaCUg -3'
miRNA:   3'- uCUGGU-CGUGGUCCC---------CCCGUCaGG-GG- -5'
3614 3' -62.8 NC_001650.1 + 15054 0.69 0.466262
Target:  5'- -uGCCAGCgggccGCUGGGGGGGaAGggacggCCCCg -3'
miRNA:   3'- ucUGGUCG-----UGGUCCCCCCgUCa-----GGGG- -5'
3614 3' -62.8 NC_001650.1 + 171067 0.69 0.466262
Target:  5'- uGGCCAGagaugacguGCCAGGcauGGGGCAaucGUCCUCg -3'
miRNA:   3'- uCUGGUCg--------UGGUCC---CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 4360 0.69 0.466262
Target:  5'- uGGCCAGagaugacguGCCAGGcauGGGGCAaucGUCCUCg -3'
miRNA:   3'- uCUGGUCg--------UGGUCC---CCCCGU---CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 88607 0.69 0.45748
Target:  5'- uGAUCAGgacgGCCAGGGGGGUcuacuccugCCCCg -3'
miRNA:   3'- uCUGGUCg---UGGUCCCCCCGuca------GGGG- -5'
3614 3' -62.8 NC_001650.1 + 102472 0.69 0.448787
Target:  5'- cAGGCC-GC-CCAGGaGGuGGCGGUaCCCa -3'
miRNA:   3'- -UCUGGuCGuGGUCC-CC-CCGUCAgGGG- -5'
3614 3' -62.8 NC_001650.1 + 3981 0.72 0.321402
Target:  5'- aGGGgUGGCGCCGGGGcGGaGCucgcccacggacagAGUCCCCa -3'
miRNA:   3'- -UCUgGUCGUGGUCCC-CC-CG--------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 94996 0.67 0.596598
Target:  5'- uGACCAuaGCCaAGGcccaGGGCAuGUCCCUg -3'
miRNA:   3'- uCUGGUcgUGG-UCCc---CCCGU-CAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 23929 0.67 0.593706
Target:  5'- -uACCAGCAggUCAGGGGccagaagaguacacGG-GGUCCCCg -3'
miRNA:   3'- ucUGGUCGU--GGUCCCC--------------CCgUCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 82979 0.67 0.587927
Target:  5'- gGGACCAGCagagggaccucaucGCCAGGGGGcuggaggcggagGUgaacaagcgggccgcGGUCUCCc -3'
miRNA:   3'- -UCUGGUCG--------------UGGUCCCCC------------CG---------------UCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 93345 0.69 0.45748
Target:  5'- gGGGCCAGUACgAGcaccugacGGGGGCGG-CCUUu -3'
miRNA:   3'- -UCUGGUCGUGgUC--------CCCCCGUCaGGGG- -5'
3614 3' -62.8 NC_001650.1 + 68664 0.67 0.586965
Target:  5'- gGGGCgaAGCugucuGCCAGGGGGcGCcGUCUCUc -3'
miRNA:   3'- -UCUGg-UCG-----UGGUCCCCC-CGuCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 130034 0.67 0.567793
Target:  5'- aGGGCCAGaucgACgAGGGGGaGCGGgCCUa -3'
miRNA:   3'- -UCUGGUCg---UGgUCCCCC-CGUCaGGGg -5'
3614 3' -62.8 NC_001650.1 + 42850 0.67 0.567793
Target:  5'- gAGACCAGCuuuCCAGGGGauacacacacGGC-GUUUUCa -3'
miRNA:   3'- -UCUGGUCGu--GGUCCCC----------CCGuCAGGGG- -5'
3614 3' -62.8 NC_001650.1 + 22635 0.67 0.567793
Target:  5'- --cCCAGCGCgCGGGGGGcGCGuacgCCUCg -3'
miRNA:   3'- ucuGGUCGUG-GUCCCCC-CGUca--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.