miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 5' -59 NC_001650.1 + 120735 0.66 0.830902
Target:  5'- gCAGGUcgccggcgcccagagGCACCUgCUCCCCgaaggaGGC-CACc -3'
miRNA:   3'- -GUCCA---------------UGUGGGgGAGGGGa-----UCGaGUG- -5'
3614 5' -59 NC_001650.1 + 147607 0.66 0.827622
Target:  5'- aCAGG-ACACCCUCUaacuccacccCCCCUuacuguggGGCUCu- -3'
miRNA:   3'- -GUCCaUGUGGGGGA----------GGGGA--------UCGAGug -5'
3614 5' -59 NC_001650.1 + 21849 0.66 0.827622
Target:  5'- uCAGGUAgGaCCCCagCCCCgcgggcAGCUCAg -3'
miRNA:   3'- -GUCCAUgUgGGGGa-GGGGa-----UCGAGUg -5'
3614 5' -59 NC_001650.1 + 18660 0.66 0.827622
Target:  5'- uCAGGUGaGCuCCCCaCCCCU-GUUUACu -3'
miRNA:   3'- -GUCCAUgUG-GGGGaGGGGAuCGAGUG- -5'
3614 5' -59 NC_001650.1 + 102579 0.66 0.820144
Target:  5'- gCAGGcgcagACGCCCUCgCCCCagaugcagcagcgacAGCUCACc -3'
miRNA:   3'- -GUCCa----UGUGGGGGaGGGGa--------------UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 11053 0.66 0.819305
Target:  5'- cCGGGcACACgCCCCUCUCUUucccaccgcGGCUCu- -3'
miRNA:   3'- -GUCCaUGUG-GGGGAGGGGA---------UCGAGug -5'
3614 5' -59 NC_001650.1 + 177760 0.66 0.819305
Target:  5'- cCGGGcACACgCCCCUCUCUUucccaccgcGGCUCu- -3'
miRNA:   3'- -GUCCaUGUG-GGGGAGGGGA---------UCGAGug -5'
3614 5' -59 NC_001650.1 + 155558 0.66 0.814236
Target:  5'- gAGGccaACGCCUCCgagcugcccgagagCCUCUGGCUCAa -3'
miRNA:   3'- gUCCa--UGUGGGGGa-------------GGGGAUCGAGUg -5'
3614 5' -59 NC_001650.1 + 158936 0.66 0.810825
Target:  5'- gAGGaccUGCgACCCCUgcacgCCCCcgAGCUCAg -3'
miRNA:   3'- gUCC---AUG-UGGGGGa----GGGGa-UCGAGUg -5'
3614 5' -59 NC_001650.1 + 86932 0.66 0.810825
Target:  5'- --uGUGCACCCUgUCggCCCUGGUUCGg -3'
miRNA:   3'- gucCAUGUGGGGgAG--GGGAUCGAGUg -5'
3614 5' -59 NC_001650.1 + 131877 0.66 0.809968
Target:  5'- aCGGGUucGCGCCCCuCUUCCCUcccaaggaggacgGGCggGCc -3'
miRNA:   3'- -GUCCA--UGUGGGG-GAGGGGA-------------UCGagUG- -5'
3614 5' -59 NC_001650.1 + 46485 0.66 0.80219
Target:  5'- gGGGUcagaaguuCACCCUCUCCCC-GGCgUCGg -3'
miRNA:   3'- gUCCAu-------GUGGGGGAGGGGaUCG-AGUg -5'
3614 5' -59 NC_001650.1 + 5579 0.66 0.80219
Target:  5'- -uGGUAagaucCCCCCUCaCUCUAGCcccUCACc -3'
miRNA:   3'- guCCAUgu---GGGGGAG-GGGAUCG---AGUG- -5'
3614 5' -59 NC_001650.1 + 172286 0.66 0.80219
Target:  5'- -uGGUAagaucCCCCCUCaCUCUAGCcccUCACc -3'
miRNA:   3'- guCCAUgu---GGGGGAG-GGGAUCG---AGUG- -5'
3614 5' -59 NC_001650.1 + 130127 0.66 0.801319
Target:  5'- aCAcGUcCGCCCCCUCUauggccugcucuaUCUGGCUCAUu -3'
miRNA:   3'- -GUcCAuGUGGGGGAGG-------------GGAUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 29270 0.66 0.796939
Target:  5'- cCAGGUACucccccacgucggccACCCCCcgcgCCCCgagGGCgUGCg -3'
miRNA:   3'- -GUCCAUG---------------UGGGGGa---GGGGa--UCGaGUG- -5'
3614 5' -59 NC_001650.1 + 94226 0.66 0.793409
Target:  5'- gCAGGUuCACCgCCUCCCUguaCUCGu -3'
miRNA:   3'- -GUCCAuGUGGgGGAGGGGaucGAGUg -5'
3614 5' -59 NC_001650.1 + 82932 0.66 0.793409
Target:  5'- gUAGGcgcccgcguCAUCCaCCgCCCCUAGCUUGCg -3'
miRNA:   3'- -GUCCau-------GUGGG-GGaGGGGAUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 74409 0.66 0.784489
Target:  5'- gAGGU-CACCCCCgacaCCCUGGuCUUc- -3'
miRNA:   3'- gUCCAuGUGGGGGag--GGGAUC-GAGug -5'
3614 5' -59 NC_001650.1 + 147886 0.66 0.784489
Target:  5'- gCAGGUAC-CCCCCagagcggCUCCcGGC-CGCg -3'
miRNA:   3'- -GUCCAUGuGGGGGa------GGGGaUCGaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.