miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 5' -59 NC_001650.1 + 32213 1.07 0.002138
Target:  5'- uCAGGUACACCCCCUCCCCUAGCUCACc -3'
miRNA:   3'- -GUCCAUGUGGGGGAGGGGAUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 67590 0.75 0.311769
Target:  5'- gUAGGcaaguaaACGCCCgCUCCCCUcgAGCUCACc -3'
miRNA:   3'- -GUCCa------UGUGGGgGAGGGGA--UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 131692 0.74 0.348188
Target:  5'- gAGGUGCucaggaccgugGCCCCCUCCCUgcGGCUCu- -3'
miRNA:   3'- gUCCAUG-----------UGGGGGAGGGGa-UCGAGug -5'
3614 5' -59 NC_001650.1 + 165818 0.74 0.386728
Target:  5'- gCGGGUACGCUCCCUUUCCUauauuggGGUUCAa -3'
miRNA:   3'- -GUCCAUGUGGGGGAGGGGA-------UCGAGUg -5'
3614 5' -59 NC_001650.1 + 51214 0.73 0.40241
Target:  5'- gGGGgccgccgcgcccGCGCCCCCgUCCCCccgcAGCUCGCa -3'
miRNA:   3'- gUCCa-----------UGUGGGGG-AGGGGa---UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 68680 0.73 0.404084
Target:  5'- cCAGGggGCGCCguCUCUCCCCcGGCUCAa -3'
miRNA:   3'- -GUCCa-UGUGG--GGGAGGGGaUCGAGUg -5'
3614 5' -59 NC_001650.1 + 99918 0.73 0.421064
Target:  5'- aGGGUcC-CCCCCUCCCCggcccGGgUCACa -3'
miRNA:   3'- gUCCAuGuGGGGGAGGGGa----UCgAGUG- -5'
3614 5' -59 NC_001650.1 + 115817 0.73 0.429714
Target:  5'- aCGGGUuCACCCCUUUCCacAGCUUACa -3'
miRNA:   3'- -GUCCAuGUGGGGGAGGGgaUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 26560 0.72 0.493011
Target:  5'- gAGGUguucucGCugCCCCUgCUCUcggGGCUCACg -3'
miRNA:   3'- gUCCA------UGugGGGGAgGGGA---UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 117334 0.71 0.509032
Target:  5'- aCGGGgGCgacgucuccaagcuGCCCCCgCCCCUGGC-CGCg -3'
miRNA:   3'- -GUCCaUG--------------UGGGGGaGGGGAUCGaGUG- -5'
3614 5' -59 NC_001650.1 + 88625 0.71 0.511882
Target:  5'- uCGGGUaguACuCCCCCUCCCCgccGC-CACc -3'
miRNA:   3'- -GUCCA---UGuGGGGGAGGGGau-CGaGUG- -5'
3614 5' -59 NC_001650.1 + 122059 0.71 0.512834
Target:  5'- gCGGGgcuggcccacaucagGCGCCCCCUgaCCCUggccuacuuccAGCUCACa -3'
miRNA:   3'- -GUCCa--------------UGUGGGGGAg-GGGA-----------UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 133352 0.71 0.531046
Target:  5'- -cGGUACuuCCCCCUCgCCgcGCUCGg -3'
miRNA:   3'- guCCAUGu-GGGGGAGgGGauCGAGUg -5'
3614 5' -59 NC_001650.1 + 128959 0.7 0.560255
Target:  5'- aGGGUccuggacacgGCGcCCCCCUCCCCUcGCUgGg -3'
miRNA:   3'- gUCCA----------UGU-GGGGGAGGGGAuCGAgUg -5'
3614 5' -59 NC_001650.1 + 118904 0.7 0.560255
Target:  5'- aCAGGaaccugUGCACCCCCUUCUCcAGCUUg- -3'
miRNA:   3'- -GUCC------AUGUGGGGGAGGGGaUCGAGug -5'
3614 5' -59 NC_001650.1 + 156669 0.7 0.570093
Target:  5'- cCAGGguggACACUUCUgcCCCCaGGCUCACg -3'
miRNA:   3'- -GUCCa---UGUGGGGGa-GGGGaUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 133500 0.7 0.579974
Target:  5'- uGGGca-GCCCCCUCCCCUucuCUCGg -3'
miRNA:   3'- gUCCaugUGGGGGAGGGGAuc-GAGUg -5'
3614 5' -59 NC_001650.1 + 110857 0.7 0.579974
Target:  5'- aGGGUGCGCCCCUUuucagcuacgggCCCCUAucGC-CGCc -3'
miRNA:   3'- gUCCAUGUGGGGGA------------GGGGAU--CGaGUG- -5'
3614 5' -59 NC_001650.1 + 50228 0.7 0.593865
Target:  5'- uCAGGcccGgGCCUCCUCCUCUuccucuugcuccacgGGCUCGCa -3'
miRNA:   3'- -GUCCa--UgUGGGGGAGGGGA---------------UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 61389 0.7 0.599836
Target:  5'- uCAGGgGCACCCUCUCUCUUGGggCAa -3'
miRNA:   3'- -GUCCaUGUGGGGGAGGGGAUCgaGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.