miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 5' -59 NC_001650.1 + 74596 0.67 0.775439
Target:  5'- -uGGUgAUGCCCCacgCCCUGGCUCAg -3'
miRNA:   3'- guCCA-UGUGGGGgagGGGAUCGAGUg -5'
3614 5' -59 NC_001650.1 + 148610 0.67 0.775439
Target:  5'- ---cUGCACCCCCcaccacccUCCCCcaggcGCUCGCa -3'
miRNA:   3'- guccAUGUGGGGG--------AGGGGau---CGAGUG- -5'
3614 5' -59 NC_001650.1 + 168717 0.67 0.775439
Target:  5'- -cGGccCACCCUCUCCCCauUGGC-CAUg -3'
miRNA:   3'- guCCauGUGGGGGAGGGG--AUCGaGUG- -5'
3614 5' -59 NC_001650.1 + 2010 0.67 0.775439
Target:  5'- -cGGccCACCCUCUCCCCauUGGC-CAUg -3'
miRNA:   3'- guCCauGUGGGGGAGGGG--AUCGaGUG- -5'
3614 5' -59 NC_001650.1 + 155618 0.67 0.775439
Target:  5'- -uGGcgcGCGCCCCCgugaCCCC--GCUCACc -3'
miRNA:   3'- guCCa--UGUGGGGGa---GGGGauCGAGUG- -5'
3614 5' -59 NC_001650.1 + 133929 0.67 0.775439
Target:  5'- uGGGgGCGCCCCCcagaCCCCggcaGGCggcCGCa -3'
miRNA:   3'- gUCCaUGUGGGGGa---GGGGa---UCGa--GUG- -5'
3614 5' -59 NC_001650.1 + 58554 0.67 0.775439
Target:  5'- gGGGUGuCGCCCCCcuuggCCCCgGGCa--- -3'
miRNA:   3'- gUCCAU-GUGGGGGa----GGGGaUCGagug -5'
3614 5' -59 NC_001650.1 + 145696 0.67 0.775439
Target:  5'- cCAGGa--GCCCCCggCCCUUucccaGGCUCAg -3'
miRNA:   3'- -GUCCaugUGGGGGa-GGGGA-----UCGAGUg -5'
3614 5' -59 NC_001650.1 + 8769 0.67 0.774527
Target:  5'- cCGGGUccacccccugcauGCaACCCCCUCCCuCUuGCUUg- -3'
miRNA:   3'- -GUCCA-------------UG-UGGGGGAGGG-GAuCGAGug -5'
3614 5' -59 NC_001650.1 + 175476 0.67 0.774527
Target:  5'- cCGGGUccacccccugcauGCaACCCCCUCCCuCUuGCUUg- -3'
miRNA:   3'- -GUCCA-------------UG-UGGGGGAGGG-GAuCGAGug -5'
3614 5' -59 NC_001650.1 + 68166 0.67 0.766266
Target:  5'- --cGUGCGCgCCgUCCUCaGGCUCGCu -3'
miRNA:   3'- gucCAUGUGgGGgAGGGGaUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 167781 0.67 0.766266
Target:  5'- uGGGccCACCCCCgggCCCCcauUGGCUUg- -3'
miRNA:   3'- gUCCauGUGGGGGa--GGGG---AUCGAGug -5'
3614 5' -59 NC_001650.1 + 1074 0.67 0.766266
Target:  5'- uGGGccCACCCCCgggCCCCcauUGGCUUg- -3'
miRNA:   3'- gUCCauGUGGGGGa--GGGG---AUCGAGug -5'
3614 5' -59 NC_001650.1 + 47917 0.67 0.766266
Target:  5'- -cGGUucACGCCCuCCUCCaacauCUGGCUCu- -3'
miRNA:   3'- guCCA--UGUGGG-GGAGGg----GAUCGAGug -5'
3614 5' -59 NC_001650.1 + 31228 0.67 0.766266
Target:  5'- uGGGaggGCGCCCCCcgCCCC-AGC-CAg -3'
miRNA:   3'- gUCCa--UGUGGGGGa-GGGGaUCGaGUg -5'
3614 5' -59 NC_001650.1 + 156545 0.67 0.766266
Target:  5'- uGGGcugagGCACCCCCUgccCCCCgucgaGGCcCACc -3'
miRNA:   3'- gUCCa----UGUGGGGGA---GGGGa----UCGaGUG- -5'
3614 5' -59 NC_001650.1 + 108069 0.67 0.756979
Target:  5'- uCGGcGUGCGCCCCCUCgCCCccGCc--- -3'
miRNA:   3'- -GUC-CAUGUGGGGGAG-GGGauCGagug -5'
3614 5' -59 NC_001650.1 + 132101 0.67 0.756979
Target:  5'- cCGGGg--ACCCCCUaCCCCUacgGGC-CGCc -3'
miRNA:   3'- -GUCCaugUGGGGGA-GGGGA---UCGaGUG- -5'
3614 5' -59 NC_001650.1 + 43681 0.67 0.756045
Target:  5'- --aGUAaACCCCCUCCCCccacauaUAGC-CACu -3'
miRNA:   3'- gucCAUgUGGGGGAGGGG-------AUCGaGUG- -5'
3614 5' -59 NC_001650.1 + 109280 0.67 0.747588
Target:  5'- gGGGgGCGCCCCgCUCgucgCCCUGGC-CAa -3'
miRNA:   3'- gUCCaUGUGGGG-GAG----GGGAUCGaGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.