miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3614 5' -59 NC_001650.1 + 134759 0.67 0.7381
Target:  5'- gAGGcgGCGCCCCCUgaugCCCCagaGGCagaccUCACg -3'
miRNA:   3'- gUCCa-UGUGGGGGA----GGGGa--UCG-----AGUG- -5'
3614 5' -59 NC_001650.1 + 24982 0.68 0.699352
Target:  5'- gGGGUucgGgGCCCCCUCCCCggAGUg--- -3'
miRNA:   3'- gUCCA---UgUGGGGGAGGGGa-UCGagug -5'
3614 5' -59 NC_001650.1 + 101790 0.68 0.699352
Target:  5'- cCAGGUACAgCCCgCCUCUCagcAGC-CGCa -3'
miRNA:   3'- -GUCCAUGU-GGG-GGAGGGga-UCGaGUG- -5'
3614 5' -59 NC_001650.1 + 134486 0.68 0.699352
Target:  5'- gAGGgcaaGCACgCCCUCCUagAGCUCAUc -3'
miRNA:   3'- gUCCa---UGUGgGGGAGGGgaUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 23823 0.68 0.70914
Target:  5'- ---cUACACCCCCUgCgCCUuuuggaAGCUCACc -3'
miRNA:   3'- guccAUGUGGGGGAgG-GGA------UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 62005 0.68 0.718867
Target:  5'- cCAGGUGCGCCUUCUgaCCCgccAGCuuUCGCu -3'
miRNA:   3'- -GUCCAUGUGGGGGAg-GGGa--UCG--AGUG- -5'
3614 5' -59 NC_001650.1 + 104755 0.67 0.728523
Target:  5'- gAGG-ACGCCCUCcCCCCUAGaUCGg -3'
miRNA:   3'- gUCCaUGUGGGGGaGGGGAUCgAGUg -5'
3614 5' -59 NC_001650.1 + 95489 0.67 0.728523
Target:  5'- uCGGGcccaagagGCuCCCCCUCCCCggcGCcCGCa -3'
miRNA:   3'- -GUCCa-------UGuGGGGGAGGGGau-CGaGUG- -5'
3614 5' -59 NC_001650.1 + 137264 0.67 0.728523
Target:  5'- aCAGGUcCACCgCCgUCCCg-GGCUgGCa -3'
miRNA:   3'- -GUCCAuGUGG-GGgAGGGgaUCGAgUG- -5'
3614 5' -59 NC_001650.1 + 24748 0.68 0.689509
Target:  5'- cCAGGaaggACACCUUCUCCCUgggcgugGGCUC-Ca -3'
miRNA:   3'- -GUCCa---UGUGGGGGAGGGGa------UCGAGuG- -5'
3614 5' -59 NC_001650.1 + 135116 0.69 0.649765
Target:  5'- -uGGUAU-CCCUCgccaUCCCCcAGCUCACa -3'
miRNA:   3'- guCCAUGuGGGGG----AGGGGaUCGAGUG- -5'
3614 5' -59 NC_001650.1 + 52857 0.69 0.639776
Target:  5'- gCGGGcGCGCCUCCUCUCgUAGCaggagggCGCg -3'
miRNA:   3'- -GUCCaUGUGGGGGAGGGgAUCGa------GUG- -5'
3614 5' -59 NC_001650.1 + 131692 0.74 0.348188
Target:  5'- gAGGUGCucaggaccgugGCCCCCUCCCUgcGGCUCu- -3'
miRNA:   3'- gUCCAUG-----------UGGGGGAGGGGa-UCGAGug -5'
3614 5' -59 NC_001650.1 + 68680 0.73 0.404084
Target:  5'- cCAGGggGCGCCguCUCUCCCCcGGCUCAa -3'
miRNA:   3'- -GUCCa-UGUGG--GGGAGGGGaUCGAGUg -5'
3614 5' -59 NC_001650.1 + 99918 0.73 0.421064
Target:  5'- aGGGUcC-CCCCCUCCCCggcccGGgUCACa -3'
miRNA:   3'- gUCCAuGuGGGGGAGGGGa----UCgAGUG- -5'
3614 5' -59 NC_001650.1 + 26560 0.72 0.493011
Target:  5'- gAGGUguucucGCugCCCCUgCUCUcggGGCUCACg -3'
miRNA:   3'- gUCCA------UGugGGGGAgGGGA---UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 122059 0.71 0.512834
Target:  5'- gCGGGgcuggcccacaucagGCGCCCCCUgaCCCUggccuacuuccAGCUCACa -3'
miRNA:   3'- -GUCCa--------------UGUGGGGGAg-GGGA-----------UCGAGUG- -5'
3614 5' -59 NC_001650.1 + 118904 0.7 0.560255
Target:  5'- aCAGGaaccugUGCACCCCCUUCUCcAGCUUg- -3'
miRNA:   3'- -GUCC------AUGUGGGGGAGGGGaUCGAGug -5'
3614 5' -59 NC_001650.1 + 110857 0.7 0.579974
Target:  5'- aGGGUGCGCCCCUUuucagcuacgggCCCCUAucGC-CGCc -3'
miRNA:   3'- gUCCAUGUGGGGGA------------GGGGAU--CGaGUG- -5'
3614 5' -59 NC_001650.1 + 24514 0.69 0.616791
Target:  5'- -cGGUccugcuccugcccgGCugCCCCUacCCCCUGGC-CGCg -3'
miRNA:   3'- guCCA--------------UGugGGGGA--GGGGAUCGaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.