Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3615 | 3' | -58.5 | NC_001650.1 | + | 112437 | 0.68 | 0.751872 |
Target: 5'- uUGGggGGUCAuGGGUgGuCAGGUGg--- -3' miRNA: 3'- -ACCuuCCAGU-CCCGgU-GUCCGCacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 158260 | 0.68 | 0.732849 |
Target: 5'- --cAGGGUuucCGGGGCCGCcugcGGCGUGUa -3' miRNA: 3'- accUUCCA---GUCCCGGUGu---CCGCACAc -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 36497 | 0.68 | 0.723208 |
Target: 5'- cGGggGG-CAGGGCCAggcugGGGC-UGUa -3' miRNA: 3'- aCCuuCCaGUCCCGGUg----UCCGcACAc -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 7735 | 0.68 | 0.703708 |
Target: 5'- gUGGAAGGUCcccauuGGGCC-CGGGUGc--- -3' miRNA: 3'- -ACCUUCCAGu-----CCCGGuGUCCGCacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 35698 | 0.68 | 0.703708 |
Target: 5'- cGGggGGcUCAcGGCCGCGGG-GUGc- -3' miRNA: 3'- aCCuuCC-AGUcCCGGUGUCCgCACac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 142334 | 0.68 | 0.703708 |
Target: 5'- cUGGAAGGagugcucCAGGaGCCGCgcgaGGGCGgGUGa -3' miRNA: 3'- -ACCUUCCa------GUCC-CGGUG----UCCGCaCAC- -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 174442 | 0.68 | 0.703708 |
Target: 5'- gUGGAAGGUCcccauuGGGCC-CGGGUGc--- -3' miRNA: 3'- -ACCUUCCAGu-----CCCGGuGUCCGCacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 13313 | 0.69 | 0.693868 |
Target: 5'- aGGGuuaGGGUUAGGGUgGCAGGCa---- -3' miRNA: 3'- aCCU---UCCAGUCCCGgUGUCCGcacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 180020 | 0.69 | 0.693868 |
Target: 5'- aGGGuuaGGGUUAGGGUgGCAGGCa---- -3' miRNA: 3'- aCCU---UCCAGUCCCGgUGUCCGcacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 105483 | 0.69 | 0.664083 |
Target: 5'- -cGAcGGUgAGGGUUACAGGUGUGg- -3' miRNA: 3'- acCUuCCAgUCCCGGUGUCCGCACac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 46481 | 0.69 | 0.664083 |
Target: 5'- aGGAguucaccucgGGGUCAGccaccGGUCGCgcggGGGCGUGUGc -3' miRNA: 3'- aCCU----------UCCAGUC-----CCGGUG----UCCGCACAC- -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 89528 | 0.69 | 0.644089 |
Target: 5'- cGGGccAGGUcCAGGGUCAgcaGGGCGUGc- -3' miRNA: 3'- aCCU--UCCA-GUCCCGGUg--UCCGCACac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 82223 | 0.69 | 0.644089 |
Target: 5'- aGGggGGcgaggCAGGGCaGCGGGCGg--- -3' miRNA: 3'- aCCuuCCa----GUCCCGgUGUCCGCacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 126196 | 0.7 | 0.614049 |
Target: 5'- aGGGAGGaaccgcggCGGGGCgGCGGGCGa--- -3' miRNA: 3'- aCCUUCCa-------GUCCCGgUGUCCGCacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 79677 | 0.7 | 0.613049 |
Target: 5'- gGGAgagagcugcgccuGGGUCAGGGCCugcgucuCGGGCGa--- -3' miRNA: 3'- aCCU-------------UCCAGUCCCGGu------GUCCGCacac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 35298 | 0.72 | 0.515734 |
Target: 5'- cGGGcgcGGGcCAGGGCCACAcGCcUGUGg -3' miRNA: 3'- aCCU---UCCaGUCCCGGUGUcCGcACAC- -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 50998 | 0.72 | 0.496761 |
Target: 5'- cGGggGGaCGGGGgCGCGGGCGcGg- -3' miRNA: 3'- aCCuuCCaGUCCCgGUGUCCGCaCac -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 53406 | 0.73 | 0.457095 |
Target: 5'- cGGAgAGGUCGGGGUCaACcggcggucagagggGGGCGUGUa -3' miRNA: 3'- aCCU-UCCAGUCCCGG-UG--------------UCCGCACAc -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 8539 | 0.76 | 0.321351 |
Target: 5'- cGGGGuGGUgGGGGCUAUggGGGUGUGUGg -3' miRNA: 3'- aCCUU-CCAgUCCCGGUG--UCCGCACAC- -5' |
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3615 | 3' | -58.5 | NC_001650.1 | + | 175246 | 0.76 | 0.321351 |
Target: 5'- cGGGGuGGUgGGGGCUAUggGGGUGUGUGg -3' miRNA: 3'- aCCUU-CCAgUCCCGGUG--UCCGCACAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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