miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3615 5' -70.2 NC_001650.1 + 156818 0.66 0.381736
Target:  5'- cCGgGCaCCGggCgUCUGGCagcaGCCCCGCCa -3'
miRNA:   3'- -GCgCG-GGCa-G-GGGCCGgg--CGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 121383 0.66 0.381736
Target:  5'- uGCugGCCaucgCCCCGGCCggggGCgCCGCCu -3'
miRNA:   3'- gCG--CGGgca-GGGGCCGGg---CGgGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 59746 0.66 0.381736
Target:  5'- gGgGCCCGUggcCCCCGGgggcgaggCGCCCC-CCa -3'
miRNA:   3'- gCgCGGGCA---GGGGCCgg------GCGGGGcGG- -5'
3615 5' -70.2 NC_001650.1 + 82525 0.66 0.381736
Target:  5'- gCGCGCuUCGggcaCCCGGgCC-CCCUGCUg -3'
miRNA:   3'- -GCGCG-GGCag--GGGCCgGGcGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 111395 0.66 0.381736
Target:  5'- gGcCGCCUGagccgCCUgGGCCUGacugggaCCCGCCu -3'
miRNA:   3'- gC-GCGGGCa----GGGgCCGGGCg------GGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 128272 0.66 0.381736
Target:  5'- cCGCGUag--CCCCucgGGUCCGCCaCCGUCu -3'
miRNA:   3'- -GCGCGggcaGGGG---CCGGGCGG-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 133431 0.66 0.381736
Target:  5'- gGCgGCCCGcUCCCaGCCC-CCaCGCCg -3'
miRNA:   3'- gCG-CGGGCaGGGGcCGGGcGGgGCGG- -5'
3615 5' -70.2 NC_001650.1 + 78813 0.66 0.381001
Target:  5'- gGCGCUCGgCCCUGaaccuggugcugaGCCCcCCCUGCUc -3'
miRNA:   3'- gCGCGGGCaGGGGC-------------CGGGcGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 75960 0.66 0.37734
Target:  5'- aCGCGCaccCCGUaccguugcacaacacUCCCGGCCCgacgaGCCCCaacacGCUg -3'
miRNA:   3'- -GCGCG---GGCA---------------GGGGCCGGG-----CGGGG-----CGG- -5'
3615 5' -70.2 NC_001650.1 + 36830 0.66 0.374429
Target:  5'- uGCuGCCCGUCCgUGagcaCCCGCCgCGUg -3'
miRNA:   3'- gCG-CGGGCAGGgGCc---GGGCGGgGCGg -5'
3615 5' -70.2 NC_001650.1 + 79001 0.66 0.374429
Target:  5'- aGCGCCgGUCgCggCGGCgaucUCGuCCCCGCUg -3'
miRNA:   3'- gCGCGGgCAGgG--GCCG----GGC-GGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 72792 0.66 0.374429
Target:  5'- gGCGCCaCGUCCgaGGCCUGCa--GCa -3'
miRNA:   3'- gCGCGG-GCAGGggCCGGGCGgggCGg -5'
3615 5' -70.2 NC_001650.1 + 110861 0.66 0.374429
Target:  5'- uGCGCCCcuuuUCagcuaCgGGCCCcuaucGCCgCCGCCg -3'
miRNA:   3'- gCGCGGGc---AGg----GgCCGGG-----CGG-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 27789 0.66 0.374429
Target:  5'- uGCGagCUGUgCCgCGGCuCCuGCCCgGCCa -3'
miRNA:   3'- gCGCg-GGCAgGG-GCCG-GG-CGGGgCGG- -5'
3615 5' -70.2 NC_001650.1 + 49750 0.66 0.374429
Target:  5'- gGgGCaCCGUgCCCGGCgCGCa--GCCg -3'
miRNA:   3'- gCgCG-GGCAgGGGCCGgGCGgggCGG- -5'
3615 5' -70.2 NC_001650.1 + 110900 0.66 0.374429
Target:  5'- gGCcuGCCCGcugggUCCCGGUCCGgCaUCGCCc -3'
miRNA:   3'- gCG--CGGGCa----GGGGCCGGGCgG-GGCGG- -5'
3615 5' -70.2 NC_001650.1 + 116965 0.66 0.374429
Target:  5'- aGUGCgaGUCCCCcgaccgcuGUCUGUCCUGCCa -3'
miRNA:   3'- gCGCGggCAGGGGc-------CGGGCGGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 36254 0.66 0.374429
Target:  5'- aCGUGCCCagGUucaggagcacgcUCCUGGgcgccuccCCCGaCCCCGCCu -3'
miRNA:   3'- -GCGCGGG--CA------------GGGGCC--------GGGC-GGGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 93766 0.66 0.370089
Target:  5'- gGCGUCCGUcugcgugggcgaCCCCacgcagaccacgcagGGCaCCGCgCCGCUc -3'
miRNA:   3'- gCGCGGGCA------------GGGG---------------CCG-GGCGgGGCGG- -5'
3615 5' -70.2 NC_001650.1 + 132603 0.66 0.367216
Target:  5'- uCGCGCCCGgCCa-GGCCgucaaagaGCUCgGCCg -3'
miRNA:   3'- -GCGCGGGCaGGggCCGGg-------CGGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.