miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 3' -51.5 NC_001650.1 + 154417 0.66 0.995511
Target:  5'- uCUCcaGGCGCgggGCGCACa-GAAAGUACAu -3'
miRNA:   3'- -GAGc-CCGUG---CGCGUGcaUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 23027 0.66 0.995511
Target:  5'- cCUCGGGCAgGagGCugGUGuAGGUc-- -3'
miRNA:   3'- -GAGCCCGUgCg-CGugCAUuUUCAugu -5'
3616 3' -51.5 NC_001650.1 + 145752 0.66 0.995511
Target:  5'- cCUgGGGgACGCGCACGUc-------- -3'
miRNA:   3'- -GAgCCCgUGCGCGUGCAuuuucaugu -5'
3616 3' -51.5 NC_001650.1 + 142806 0.66 0.995511
Target:  5'- -gCGGGCGCGUGCAUGg--------- -3'
miRNA:   3'- gaGCCCGUGCGCGUGCauuuucaugu -5'
3616 3' -51.5 NC_001650.1 + 69407 0.66 0.995511
Target:  5'- -aCGaguuGCACGCGCACGg---GGUGCu -3'
miRNA:   3'- gaGCc---CGUGCGCGUGCauuuUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 122138 0.66 0.994779
Target:  5'- gCUCGGGgGCGgGgGCGgcggGAGGGggagACGg -3'
miRNA:   3'- -GAGCCCgUGCgCgUGCa---UUUUCa---UGU- -5'
3616 3' -51.5 NC_001650.1 + 122635 0.66 0.993953
Target:  5'- --aGGGgACGCGCAgGUGcccGGAGgcggACAg -3'
miRNA:   3'- gagCCCgUGCGCGUgCAU---UUUCa---UGU- -5'
3616 3' -51.5 NC_001650.1 + 89360 0.66 0.993953
Target:  5'- gUUGGGCGCGCGCGuCGagaaccccgGGGAGUuucucGCGc -3'
miRNA:   3'- gAGCCCGUGCGCGU-GCa--------UUUUCA-----UGU- -5'
3616 3' -51.5 NC_001650.1 + 108813 0.66 0.993865
Target:  5'- aCUCGGGacaacCugGCccGCGCGUGGGAgcgggccGUGCAg -3'
miRNA:   3'- -GAGCCC-----GugCG--CGUGCAUUUU-------CAUGU- -5'
3616 3' -51.5 NC_001650.1 + 92705 0.66 0.993025
Target:  5'- -gCGGGacaGCGCccucuUGUAGAGGUGCAc -3'
miRNA:   3'- gaGCCCgugCGCGu----GCAUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 131964 0.66 0.991987
Target:  5'- cCUCGGGCcUGCuC-CGggGGAAGUACAu -3'
miRNA:   3'- -GAGCCCGuGCGcGuGCa-UUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 100654 0.66 0.991987
Target:  5'- -cCGGGUACGCGC-CGUccGGGgGCc -3'
miRNA:   3'- gaGCCCGUGCGCGuGCAuuUUCaUGu -5'
3616 3' -51.5 NC_001650.1 + 24373 0.66 0.99083
Target:  5'- aCUCGG---UGCGCAUGgaGAGGUACGg -3'
miRNA:   3'- -GAGCCcguGCGCGUGCauUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 57838 0.66 0.99083
Target:  5'- -cCGGGCGguggcaGCgGCACGUAGggcAGGUACu -3'
miRNA:   3'- gaGCCCGUg-----CG-CGUGCAUU---UUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 23315 0.66 0.99083
Target:  5'- cCUCGGGCAggguCGCGCAgc----AGUGCGg -3'
miRNA:   3'- -GAGCCCGU----GCGCGUgcauuuUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 156218 0.66 0.99083
Target:  5'- -aCGGGCGagGgGCACGUGGuGGUcacGCAg -3'
miRNA:   3'- gaGCCCGUg-CgCGUGCAUUuUCA---UGU- -5'
3616 3' -51.5 NC_001650.1 + 146081 0.67 0.989545
Target:  5'- uUCGGgGC-CGCGUACGUGGAcuccaAG-ACAg -3'
miRNA:   3'- gAGCC-CGuGCGCGUGCAUUU-----UCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 124071 0.67 0.989545
Target:  5'- -cCGGGCACGCa---GUGGGGGUugAa -3'
miRNA:   3'- gaGCCCGUGCGcgugCAUUUUCAugU- -5'
3616 3' -51.5 NC_001650.1 + 78730 0.67 0.986558
Target:  5'- gCUCGcugaGGCccucuagcuACGUGCGCGUGAuAGGUGCu -3'
miRNA:   3'- -GAGC----CCG---------UGCGCGUGCAUU-UUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 24181 0.67 0.986558
Target:  5'- -cCGGGguCGCGCugG---AGGUGCc -3'
miRNA:   3'- gaGCCCguGCGCGugCauuUUCAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.