Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3616 | 3' | -51.5 | NC_001650.1 | + | 22219 | 0.71 | 0.900737 |
Target: 5'- -aCGGGCACGCGgGCGaacuuGAGGU-CAg -3' miRNA: 3'- gaGCCCGUGCGCgUGCau---UUUCAuGU- -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 79709 | 0.72 | 0.887261 |
Target: 5'- uCUCGGGCgagcGCGgGCACGUAGGGcucuggGCAg -3' miRNA: 3'- -GAGCCCG----UGCgCGUGCAUUUUca----UGU- -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 80948 | 0.72 | 0.872851 |
Target: 5'- --aGGGC-CGCGCAgGaAAGGGUGCAc -3' miRNA: 3'- gagCCCGuGCGCGUgCaUUUUCAUGU- -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 132240 | 0.72 | 0.865308 |
Target: 5'- aCUCGGcCGCGgccaGCGCGUAGAgcaGGUGCAg -3' miRNA: 3'- -GAGCCcGUGCg---CGUGCAUUU---UCAUGU- -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 72447 | 0.72 | 0.880171 |
Target: 5'- -aCGGGCACGUGUGCGggaUGGGGGUGg- -3' miRNA: 3'- gaGCCCGUGCGCGUGC---AUUUUCAUgu -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 71410 | 0.73 | 0.852787 |
Target: 5'- gCUUGGGCAUGUGCAgGcccacggggaaguagUAGGAGUACu -3' miRNA: 3'- -GAGCCCGUGCGCGUgC---------------AUUUUCAUGu -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 22437 | 0.74 | 0.806792 |
Target: 5'- gCUCGGGCGCGCccacccuccuggGCuuCGUGAGGGUGa- -3' miRNA: 3'- -GAGCCCGUGCG------------CGu-GCAUUUUCAUgu -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 77166 | 0.74 | 0.797709 |
Target: 5'- cCUCGGGCACGgGCAUGggggcGGUGg- -3' miRNA: 3'- -GAGCCCGUGCgCGUGCauuu-UCAUgu -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 122675 | 0.74 | 0.769564 |
Target: 5'- -aCGGGCACGgGCACGUccacGUACc -3' miRNA: 3'- gaGCCCGUGCgCGUGCAuuuuCAUGu -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 21617 | 0.75 | 0.759916 |
Target: 5'- -cCGGGgccgugcugcCACGUggGCACGUAGAAGUACAc -3' miRNA: 3'- gaGCCC----------GUGCG--CGUGCAUUUUCAUGU- -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 128461 | 0.76 | 0.699901 |
Target: 5'- cCUCGGGCACGgGCcCGUAGgcGcGCAg -3' miRNA: 3'- -GAGCCCGUGCgCGuGCAUUuuCaUGU- -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 51171 | 0.78 | 0.585733 |
Target: 5'- -aCGGGCAgGCGCACGUAGucGuUGCu -3' miRNA: 3'- gaGCCCGUgCGCGUGCAUUuuC-AUGu -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 109187 | 0.78 | 0.606487 |
Target: 5'- -aCGGGCAgGCGCGgGUuAAAGUACu -3' miRNA: 3'- gaGCCCGUgCGCGUgCAuUUUCAUGu -5' |
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3616 | 3' | -51.5 | NC_001650.1 | + | 35709 | 1.1 | 0.008646 |
Target: 5'- cCUCGGGCACGCGCACGUAAAAGUACAg -3' miRNA: 3'- -GAGCCCGUGCGCGUGCAUUUUCAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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