miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 3' -51.5 NC_001650.1 + 35709 1.1 0.008646
Target:  5'- cCUCGGGCACGCGCACGUAAAAGUACAg -3'
miRNA:   3'- -GAGCCCGUGCGCGUGCAUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 51171 0.78 0.585733
Target:  5'- -aCGGGCAgGCGCACGUAGucGuUGCu -3'
miRNA:   3'- gaGCCCGUgCGCGUGCAUUuuC-AUGu -5'
3616 3' -51.5 NC_001650.1 + 109187 0.78 0.606487
Target:  5'- -aCGGGCAgGCGCGgGUuAAAGUACu -3'
miRNA:   3'- gaGCCCGUgCGCGUgCAuUUUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 128461 0.76 0.699901
Target:  5'- cCUCGGGCACGgGCcCGUAGgcGcGCAg -3'
miRNA:   3'- -GAGCCCGUGCgCGuGCAUUuuCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 21617 0.75 0.759916
Target:  5'- -cCGGGgccgugcugcCACGUggGCACGUAGAAGUACAc -3'
miRNA:   3'- gaGCCC----------GUGCG--CGUGCAUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 122675 0.74 0.769564
Target:  5'- -aCGGGCACGgGCACGUccacGUACc -3'
miRNA:   3'- gaGCCCGUGCgCGUGCAuuuuCAUGu -5'
3616 3' -51.5 NC_001650.1 + 77166 0.74 0.797709
Target:  5'- cCUCGGGCACGgGCAUGggggcGGUGg- -3'
miRNA:   3'- -GAGCCCGUGCgCGUGCauuu-UCAUgu -5'
3616 3' -51.5 NC_001650.1 + 22437 0.74 0.806792
Target:  5'- gCUCGGGCGCGCccacccuccuggGCuuCGUGAGGGUGa- -3'
miRNA:   3'- -GAGCCCGUGCG------------CGu-GCAUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 71410 0.73 0.852787
Target:  5'- gCUUGGGCAUGUGCAgGcccacggggaaguagUAGGAGUACu -3'
miRNA:   3'- -GAGCCCGUGCGCGUgC---------------AUUUUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 132240 0.72 0.865308
Target:  5'- aCUCGGcCGCGgccaGCGCGUAGAgcaGGUGCAg -3'
miRNA:   3'- -GAGCCcGUGCg---CGUGCAUUU---UCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 80948 0.72 0.872851
Target:  5'- --aGGGC-CGCGCAgGaAAGGGUGCAc -3'
miRNA:   3'- gagCCCGuGCGCGUgCaUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 72447 0.72 0.880171
Target:  5'- -aCGGGCACGUGUGCGggaUGGGGGUGg- -3'
miRNA:   3'- gaGCCCGUGCGCGUGC---AUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 79709 0.72 0.887261
Target:  5'- uCUCGGGCgagcGCGgGCACGUAGGGcucuggGCAg -3'
miRNA:   3'- -GAGCCCG----UGCgCGUGCAUUUUca----UGU- -5'
3616 3' -51.5 NC_001650.1 + 22219 0.71 0.900737
Target:  5'- -aCGGGCACGCGgGCGaacuuGAGGU-CAg -3'
miRNA:   3'- gaGCCCGUGCGCgUGCau---UUUCAuGU- -5'
3616 3' -51.5 NC_001650.1 + 125475 0.7 0.944861
Target:  5'- aCUCGGGCGCG-GCGgcggagacucuuUGUGGGAGUucACAu -3'
miRNA:   3'- -GAGCCCGUGCgCGU------------GCAUUUUCA--UGU- -5'
3616 3' -51.5 NC_001650.1 + 9025 0.7 0.944861
Target:  5'- --aGGGgGCGCGCGCG-GGAGGgGCAu -3'
miRNA:   3'- gagCCCgUGCGCGUGCaUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 175732 0.7 0.944861
Target:  5'- --aGGGgGCGCGCGCG-GGAGGgGCAu -3'
miRNA:   3'- gagCCCgUGCGCGUGCaUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 82696 0.7 0.947971
Target:  5'- aCUCGGGguCGuCGCAgaaggaccuccuccCGUAGAAGaGCAg -3'
miRNA:   3'- -GAGCCCguGC-GCGU--------------GCAUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 102647 0.7 0.949268
Target:  5'- -aCGGGCACGaCGCACGgc----UGCAg -3'
miRNA:   3'- gaGCCCGUGC-GCGUGCauuuucAUGU- -5'
3616 3' -51.5 NC_001650.1 + 48079 0.69 0.961062
Target:  5'- -gUGGGCAUGUGCGUGgacAGGUGCAg -3'
miRNA:   3'- gaGCCCGUGCGCGUGCauuUUCAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.