miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 3' -51.5 NC_001650.1 + 50820 0.69 0.967777
Target:  5'- uCUCGGGCACcgcggccccgGCGCGCG--AGGGcgGCGa -3'
miRNA:   3'- -GAGCCCGUG----------CGCGUGCauUUUCa-UGU- -5'
3616 3' -51.5 NC_001650.1 + 126453 0.68 0.970807
Target:  5'- aUCGGccguccgaGCGCGCGCGUGGGGG-ACGg -3'
miRNA:   3'- gAGCCcg------UGCGCGUGCAUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 94502 0.68 0.976244
Target:  5'- aCUCGGGCugGU---CGUGGGAGUGg- -3'
miRNA:   3'- -GAGCCCGugCGcguGCAUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 136783 0.68 0.976244
Target:  5'- cCUgGGGCugGUGCGgCGaUGGAcccGGUGCGc -3'
miRNA:   3'- -GAgCCCGugCGCGU-GC-AUUU---UCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 42843 0.68 0.978666
Target:  5'- -cCGGGCACGUGUGuCGccu-GGUGCGg -3'
miRNA:   3'- gaGCCCGUGCGCGU-GCauuuUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 94740 0.68 0.978666
Target:  5'- cCUgGGGUACGCGUccaACGUGGAcaccUACAa -3'
miRNA:   3'- -GAgCCCGUGCGCG---UGCAUUUuc--AUGU- -5'
3616 3' -51.5 NC_001650.1 + 123304 0.68 0.9809
Target:  5'- --aGGaGCGCGCGCACGc--GAGUGgGg -3'
miRNA:   3'- gagCC-CGUGCGCGUGCauuUUCAUgU- -5'
3616 3' -51.5 NC_001650.1 + 69051 0.68 0.9809
Target:  5'- -cCGGGCGCGCgGCACGUcccguccGAGGcGCc -3'
miRNA:   3'- gaGCCCGUGCG-CGUGCAu------UUUCaUGu -5'
3616 3' -51.5 NC_001650.1 + 73194 0.67 0.982954
Target:  5'- --gGGGCGCaggaGCGCGCGUAcuGGgcCAu -3'
miRNA:   3'- gagCCCGUG----CGCGUGCAUuuUCauGU- -5'
3616 3' -51.5 NC_001650.1 + 83230 0.67 0.982954
Target:  5'- --gGGGCGguCGCGCGCGUcgAGAAGcucUGCGa -3'
miRNA:   3'- gagCCCGU--GCGCGUGCA--UUUUC---AUGU- -5'
3616 3' -51.5 NC_001650.1 + 122465 0.67 0.982954
Target:  5'- -cCGGGUACGUGgACGUGcccGUGCc -3'
miRNA:   3'- gaGCCCGUGCGCgUGCAUuuuCAUGu -5'
3616 3' -51.5 NC_001650.1 + 108683 0.67 0.982954
Target:  5'- --aGGGacccCACGCGCACGUGguucuuGAGGUAgGa -3'
miRNA:   3'- gagCCC----GUGCGCGUGCAU------UUUCAUgU- -5'
3616 3' -51.5 NC_001650.1 + 65009 0.67 0.984837
Target:  5'- -gCGGGCca--GCACGUGAAAGUGa- -3'
miRNA:   3'- gaGCCCGugcgCGUGCAUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 78730 0.67 0.986558
Target:  5'- gCUCGcugaGGCccucuagcuACGUGCGCGUGAuAGGUGCu -3'
miRNA:   3'- -GAGC----CCG---------UGCGCGUGCAUU-UUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 24181 0.67 0.986558
Target:  5'- -cCGGGguCGCGCugG---AGGUGCc -3'
miRNA:   3'- gaGCCCguGCGCGugCauuUUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 110863 0.67 0.986558
Target:  5'- --gGGGCGCGUGCGCGggGAcgGGUc-- -3'
miRNA:   3'- gagCCCGUGCGCGUGCauUU--UCAugu -5'
3616 3' -51.5 NC_001650.1 + 124071 0.67 0.989545
Target:  5'- -cCGGGCACGCa---GUGGGGGUugAa -3'
miRNA:   3'- gaGCCCGUGCGcgugCAUUUUCAugU- -5'
3616 3' -51.5 NC_001650.1 + 146081 0.67 0.989545
Target:  5'- uUCGGgGC-CGCGUACGUGGAcuccaAG-ACAg -3'
miRNA:   3'- gAGCC-CGuGCGCGUGCAUUU-----UCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 24373 0.66 0.99083
Target:  5'- aCUCGG---UGCGCAUGgaGAGGUACGg -3'
miRNA:   3'- -GAGCCcguGCGCGUGCauUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 57838 0.66 0.99083
Target:  5'- -cCGGGCGguggcaGCgGCACGUAGggcAGGUACu -3'
miRNA:   3'- gaGCCCGUg-----CG-CGUGCAUU---UUCAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.