miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 3' -51.5 NC_001650.1 + 9025 0.7 0.944861
Target:  5'- --aGGGgGCGCGCGCG-GGAGGgGCAu -3'
miRNA:   3'- gagCCCgUGCGCGUGCaUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 21617 0.75 0.759916
Target:  5'- -cCGGGgccgugcugcCACGUggGCACGUAGAAGUACAc -3'
miRNA:   3'- gaGCCC----------GUGCG--CGUGCAUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 22219 0.71 0.900737
Target:  5'- -aCGGGCACGCGgGCGaacuuGAGGU-CAg -3'
miRNA:   3'- gaGCCCGUGCGCgUGCau---UUUCAuGU- -5'
3616 3' -51.5 NC_001650.1 + 22437 0.74 0.806792
Target:  5'- gCUCGGGCGCGCccacccuccuggGCuuCGUGAGGGUGa- -3'
miRNA:   3'- -GAGCCCGUGCG------------CGu-GCAUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 23027 0.66 0.995511
Target:  5'- cCUCGGGCAgGagGCugGUGuAGGUc-- -3'
miRNA:   3'- -GAGCCCGUgCg-CGugCAUuUUCAugu -5'
3616 3' -51.5 NC_001650.1 + 23315 0.66 0.99083
Target:  5'- cCUCGGGCAggguCGCGCAgc----AGUGCGg -3'
miRNA:   3'- -GAGCCCGU----GCGCGUgcauuuUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 24181 0.67 0.986558
Target:  5'- -cCGGGguCGCGCugG---AGGUGCc -3'
miRNA:   3'- gaGCCCguGCGCGugCauuUUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 24373 0.66 0.99083
Target:  5'- aCUCGG---UGCGCAUGgaGAGGUACGg -3'
miRNA:   3'- -GAGCCcguGCGCGUGCauUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 35709 1.1 0.008646
Target:  5'- cCUCGGGCACGCGCACGUAAAAGUACAg -3'
miRNA:   3'- -GAGCCCGUGCGCGUGCAUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 42843 0.68 0.978666
Target:  5'- -cCGGGCACGUGUGuCGccu-GGUGCGg -3'
miRNA:   3'- gaGCCCGUGCGCGU-GCauuuUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 48079 0.69 0.961062
Target:  5'- -gUGGGCAUGUGCGUGgacAGGUGCAg -3'
miRNA:   3'- gaGCCCGUGCGCGUGCauuUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 50820 0.69 0.967777
Target:  5'- uCUCGGGCACcgcggccccgGCGCGCG--AGGGcgGCGa -3'
miRNA:   3'- -GAGCCCGUG----------CGCGUGCauUUUCa-UGU- -5'
3616 3' -51.5 NC_001650.1 + 51171 0.78 0.585733
Target:  5'- -aCGGGCAgGCGCACGUAGucGuUGCu -3'
miRNA:   3'- gaGCCCGUgCGCGUGCAUUuuC-AUGu -5'
3616 3' -51.5 NC_001650.1 + 57838 0.66 0.99083
Target:  5'- -cCGGGCGguggcaGCgGCACGUAGggcAGGUACu -3'
miRNA:   3'- gaGCCCGUg-----CG-CGUGCAUU---UUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 65009 0.67 0.984837
Target:  5'- -gCGGGCca--GCACGUGAAAGUGa- -3'
miRNA:   3'- gaGCCCGugcgCGUGCAUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 69051 0.68 0.9809
Target:  5'- -cCGGGCGCGCgGCACGUcccguccGAGGcGCc -3'
miRNA:   3'- gaGCCCGUGCG-CGUGCAu------UUUCaUGu -5'
3616 3' -51.5 NC_001650.1 + 69407 0.66 0.995511
Target:  5'- -aCGaguuGCACGCGCACGg---GGUGCu -3'
miRNA:   3'- gaGCc---CGUGCGCGUGCauuuUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 71410 0.73 0.852787
Target:  5'- gCUUGGGCAUGUGCAgGcccacggggaaguagUAGGAGUACu -3'
miRNA:   3'- -GAGCCCGUGCGCGUgC---------------AUUUUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 72447 0.72 0.880171
Target:  5'- -aCGGGCACGUGUGCGggaUGGGGGUGg- -3'
miRNA:   3'- gaGCCCGUGCGCGUGC---AUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 73194 0.67 0.982954
Target:  5'- --gGGGCGCaggaGCGCGCGUAcuGGgcCAu -3'
miRNA:   3'- gagCCCGUG----CGCGUGCAUuuUCauGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.