miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 3' -51.5 NC_001650.1 + 123304 0.68 0.9809
Target:  5'- --aGGaGCGCGCGCACGc--GAGUGgGg -3'
miRNA:   3'- gagCC-CGUGCGCGUGCauuUUCAUgU- -5'
3616 3' -51.5 NC_001650.1 + 124071 0.67 0.989545
Target:  5'- -cCGGGCACGCa---GUGGGGGUugAa -3'
miRNA:   3'- gaGCCCGUGCGcgugCAUUUUCAugU- -5'
3616 3' -51.5 NC_001650.1 + 125475 0.7 0.944861
Target:  5'- aCUCGGGCGCG-GCGgcggagacucuuUGUGGGAGUucACAu -3'
miRNA:   3'- -GAGCCCGUGCgCGU------------GCAUUUUCA--UGU- -5'
3616 3' -51.5 NC_001650.1 + 126453 0.68 0.970807
Target:  5'- aUCGGccguccgaGCGCGCGCGUGGGGG-ACGg -3'
miRNA:   3'- gAGCCcg------UGCGCGUGCAUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 128461 0.76 0.699901
Target:  5'- cCUCGGGCACGgGCcCGUAGgcGcGCAg -3'
miRNA:   3'- -GAGCCCGUGCgCGuGCAUUuuCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 131964 0.66 0.991987
Target:  5'- cCUCGGGCcUGCuC-CGggGGAAGUACAu -3'
miRNA:   3'- -GAGCCCGuGCGcGuGCa-UUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 132240 0.72 0.865308
Target:  5'- aCUCGGcCGCGgccaGCGCGUAGAgcaGGUGCAg -3'
miRNA:   3'- -GAGCCcGUGCg---CGUGCAUUU---UCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 136783 0.68 0.976244
Target:  5'- cCUgGGGCugGUGCGgCGaUGGAcccGGUGCGc -3'
miRNA:   3'- -GAgCCCGugCGCGU-GC-AUUU---UCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 142806 0.66 0.995511
Target:  5'- -gCGGGCGCGUGCAUGg--------- -3'
miRNA:   3'- gaGCCCGUGCGCGUGCauuuucaugu -5'
3616 3' -51.5 NC_001650.1 + 145752 0.66 0.995511
Target:  5'- cCUgGGGgACGCGCACGUc-------- -3'
miRNA:   3'- -GAgCCCgUGCGCGUGCAuuuucaugu -5'
3616 3' -51.5 NC_001650.1 + 146081 0.67 0.989545
Target:  5'- uUCGGgGC-CGCGUACGUGGAcuccaAG-ACAg -3'
miRNA:   3'- gAGCC-CGuGCGCGUGCAUUU-----UCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 154417 0.66 0.995511
Target:  5'- uCUCcaGGCGCgggGCGCACa-GAAAGUACAu -3'
miRNA:   3'- -GAGc-CCGUG---CGCGUGcaUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 156218 0.66 0.99083
Target:  5'- -aCGGGCGagGgGCACGUGGuGGUcacGCAg -3'
miRNA:   3'- gaGCCCGUg-CgCGUGCAUUuUCA---UGU- -5'
3616 3' -51.5 NC_001650.1 + 175732 0.7 0.944861
Target:  5'- --aGGGgGCGCGCGCG-GGAGGgGCAu -3'
miRNA:   3'- gagCCCgUGCGCGUGCaUUUUCaUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.