miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 3' -51.5 NC_001650.1 + 108813 0.66 0.993865
Target:  5'- aCUCGGGacaacCugGCccGCGCGUGGGAgcgggccGUGCAg -3'
miRNA:   3'- -GAGCCC-----GugCG--CGUGCAUUUU-------CAUGU- -5'
3616 3' -51.5 NC_001650.1 + 108683 0.67 0.982954
Target:  5'- --aGGGacccCACGCGCACGUGguucuuGAGGUAgGa -3'
miRNA:   3'- gagCCC----GUGCGCGUGCAU------UUUCAUgU- -5'
3616 3' -51.5 NC_001650.1 + 102647 0.7 0.949268
Target:  5'- -aCGGGCACGaCGCACGgc----UGCAg -3'
miRNA:   3'- gaGCCCGUGC-GCGUGCauuuucAUGU- -5'
3616 3' -51.5 NC_001650.1 + 100654 0.66 0.991987
Target:  5'- -cCGGGUACGCGC-CGUccGGGgGCc -3'
miRNA:   3'- gaGCCCGUGCGCGuGCAuuUUCaUGu -5'
3616 3' -51.5 NC_001650.1 + 94740 0.68 0.978666
Target:  5'- cCUgGGGUACGCGUccaACGUGGAcaccUACAa -3'
miRNA:   3'- -GAgCCCGUGCGCG---UGCAUUUuc--AUGU- -5'
3616 3' -51.5 NC_001650.1 + 94502 0.68 0.976244
Target:  5'- aCUCGGGCugGU---CGUGGGAGUGg- -3'
miRNA:   3'- -GAGCCCGugCGcguGCAUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 92705 0.66 0.993025
Target:  5'- -gCGGGacaGCGCccucuUGUAGAGGUGCAc -3'
miRNA:   3'- gaGCCCgugCGCGu----GCAUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 89360 0.66 0.993953
Target:  5'- gUUGGGCGCGCGCGuCGagaaccccgGGGAGUuucucGCGc -3'
miRNA:   3'- gAGCCCGUGCGCGU-GCa--------UUUUCA-----UGU- -5'
3616 3' -51.5 NC_001650.1 + 83230 0.67 0.982954
Target:  5'- --gGGGCGguCGCGCGCGUcgAGAAGcucUGCGa -3'
miRNA:   3'- gagCCCGU--GCGCGUGCA--UUUUC---AUGU- -5'
3616 3' -51.5 NC_001650.1 + 82696 0.7 0.947971
Target:  5'- aCUCGGGguCGuCGCAgaaggaccuccuccCGUAGAAGaGCAg -3'
miRNA:   3'- -GAGCCCguGC-GCGU--------------GCAUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 80948 0.72 0.872851
Target:  5'- --aGGGC-CGCGCAgGaAAGGGUGCAc -3'
miRNA:   3'- gagCCCGuGCGCGUgCaUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 79709 0.72 0.887261
Target:  5'- uCUCGGGCgagcGCGgGCACGUAGGGcucuggGCAg -3'
miRNA:   3'- -GAGCCCG----UGCgCGUGCAUUUUca----UGU- -5'
3616 3' -51.5 NC_001650.1 + 78730 0.67 0.986558
Target:  5'- gCUCGcugaGGCccucuagcuACGUGCGCGUGAuAGGUGCu -3'
miRNA:   3'- -GAGC----CCG---------UGCGCGUGCAUU-UUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 77166 0.74 0.797709
Target:  5'- cCUCGGGCACGgGCAUGggggcGGUGg- -3'
miRNA:   3'- -GAGCCCGUGCgCGUGCauuu-UCAUgu -5'
3616 3' -51.5 NC_001650.1 + 73194 0.67 0.982954
Target:  5'- --gGGGCGCaggaGCGCGCGUAcuGGgcCAu -3'
miRNA:   3'- gagCCCGUG----CGCGUGCAUuuUCauGU- -5'
3616 3' -51.5 NC_001650.1 + 72447 0.72 0.880171
Target:  5'- -aCGGGCACGUGUGCGggaUGGGGGUGg- -3'
miRNA:   3'- gaGCCCGUGCGCGUGC---AUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 71410 0.73 0.852787
Target:  5'- gCUUGGGCAUGUGCAgGcccacggggaaguagUAGGAGUACu -3'
miRNA:   3'- -GAGCCCGUGCGCGUgC---------------AUUUUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 69407 0.66 0.995511
Target:  5'- -aCGaguuGCACGCGCACGg---GGUGCu -3'
miRNA:   3'- gaGCc---CGUGCGCGUGCauuuUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 69051 0.68 0.9809
Target:  5'- -cCGGGCGCGCgGCACGUcccguccGAGGcGCc -3'
miRNA:   3'- gaGCCCGUGCG-CGUGCAu------UUUCaUGu -5'
3616 3' -51.5 NC_001650.1 + 65009 0.67 0.984837
Target:  5'- -gCGGGCca--GCACGUGAAAGUGa- -3'
miRNA:   3'- gaGCCCGugcgCGUGCAUUUUCAUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.