miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 3' -51.5 NC_001650.1 + 154417 0.66 0.995511
Target:  5'- uCUCcaGGCGCgggGCGCACa-GAAAGUACAu -3'
miRNA:   3'- -GAGc-CCGUG---CGCGUGcaUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 78730 0.67 0.986558
Target:  5'- gCUCGcugaGGCccucuagcuACGUGCGCGUGAuAGGUGCu -3'
miRNA:   3'- -GAGC----CCG---------UGCGCGUGCAUU-UUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 23315 0.66 0.99083
Target:  5'- cCUCGGGCAggguCGCGCAgc----AGUGCGg -3'
miRNA:   3'- -GAGCCCGU----GCGCGUgcauuuUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 57838 0.66 0.99083
Target:  5'- -cCGGGCGguggcaGCgGCACGUAGggcAGGUACu -3'
miRNA:   3'- gaGCCCGUg-----CG-CGUGCAUU---UUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 24373 0.66 0.99083
Target:  5'- aCUCGG---UGCGCAUGgaGAGGUACGg -3'
miRNA:   3'- -GAGCCcguGCGCGUGCauUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 92705 0.66 0.993025
Target:  5'- -gCGGGacaGCGCccucuUGUAGAGGUGCAc -3'
miRNA:   3'- gaGCCCgugCGCGu----GCAUUUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 108813 0.66 0.993865
Target:  5'- aCUCGGGacaacCugGCccGCGCGUGGGAgcgggccGUGCAg -3'
miRNA:   3'- -GAGCCC-----GugCG--CGUGCAUUUU-------CAUGU- -5'
3616 3' -51.5 NC_001650.1 + 89360 0.66 0.993953
Target:  5'- gUUGGGCGCGCGCGuCGagaaccccgGGGAGUuucucGCGc -3'
miRNA:   3'- gAGCCCGUGCGCGU-GCa--------UUUUCA-----UGU- -5'
3616 3' -51.5 NC_001650.1 + 122138 0.66 0.994779
Target:  5'- gCUCGGGgGCGgGgGCGgcggGAGGGggagACGg -3'
miRNA:   3'- -GAGCCCgUGCgCgUGCa---UUUUCa---UGU- -5'
3616 3' -51.5 NC_001650.1 + 24181 0.67 0.986558
Target:  5'- -cCGGGguCGCGCugG---AGGUGCc -3'
miRNA:   3'- gaGCCCguGCGCGugCauuUUCAUGu -5'
3616 3' -51.5 NC_001650.1 + 65009 0.67 0.984837
Target:  5'- -gCGGGCca--GCACGUGAAAGUGa- -3'
miRNA:   3'- gaGCCCGugcgCGUGCAUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 83230 0.67 0.982954
Target:  5'- --gGGGCGguCGCGCGCGUcgAGAAGcucUGCGa -3'
miRNA:   3'- gagCCCGU--GCGCGUGCA--UUUUC---AUGU- -5'
3616 3' -51.5 NC_001650.1 + 72447 0.72 0.880171
Target:  5'- -aCGGGCACGUGUGCGggaUGGGGGUGg- -3'
miRNA:   3'- gaGCCCGUGCGCGUGC---AUUUUCAUgu -5'
3616 3' -51.5 NC_001650.1 + 79709 0.72 0.887261
Target:  5'- uCUCGGGCgagcGCGgGCACGUAGGGcucuggGCAg -3'
miRNA:   3'- -GAGCCCG----UGCgCGUGCAUUUUca----UGU- -5'
3616 3' -51.5 NC_001650.1 + 48079 0.69 0.961062
Target:  5'- -gUGGGCAUGUGCGUGgacAGGUGCAg -3'
miRNA:   3'- gaGCCCGUGCGCGUGCauuUUCAUGU- -5'
3616 3' -51.5 NC_001650.1 + 50820 0.69 0.967777
Target:  5'- uCUCGGGCACcgcggccccgGCGCGCG--AGGGcgGCGa -3'
miRNA:   3'- -GAGCCCGUG----------CGCGUGCauUUUCa-UGU- -5'
3616 3' -51.5 NC_001650.1 + 126453 0.68 0.970807
Target:  5'- aUCGGccguccgaGCGCGCGCGUGGGGG-ACGg -3'
miRNA:   3'- gAGCCcg------UGCGCGUGCAUUUUCaUGU- -5'
3616 3' -51.5 NC_001650.1 + 94740 0.68 0.978666
Target:  5'- cCUgGGGUACGCGUccaACGUGGAcaccUACAa -3'
miRNA:   3'- -GAgCCCGUGCGCG---UGCAUUUuc--AUGU- -5'
3616 3' -51.5 NC_001650.1 + 123304 0.68 0.9809
Target:  5'- --aGGaGCGCGCGCACGc--GAGUGgGg -3'
miRNA:   3'- gagCC-CGUGCGCGUGCauuUUCAUgU- -5'
3616 3' -51.5 NC_001650.1 + 122465 0.67 0.982954
Target:  5'- -cCGGGUACGUGgACGUGcccGUGCc -3'
miRNA:   3'- gaGCCCGUGCGCgUGCAUuuuCAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.