miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3616 5' -55.7 NC_001650.1 + 28434 0.66 0.949813
Target:  5'- aCACGUUgcaCACGUACugGacuaUGUGGUgGa -3'
miRNA:   3'- -GUGCAA---GUGCGUGugCg---ACGCCAgCa -5'
3616 5' -55.7 NC_001650.1 + 147974 0.66 0.945576
Target:  5'- gUACGcgCgACGCACcuGCGCU-CGGUCGc -3'
miRNA:   3'- -GUGCaaG-UGCGUG--UGCGAcGCCAGCa -5'
3616 5' -55.7 NC_001650.1 + 74042 0.66 0.945576
Target:  5'- -uCGUUCAccaggcCGUACAgGCcGCGGUUGUu -3'
miRNA:   3'- guGCAAGU------GCGUGUgCGaCGCCAGCA- -5'
3616 5' -55.7 NC_001650.1 + 80600 0.66 0.936417
Target:  5'- gCACGUUCugGgGCGCGgagaugGCGGgcUCGg -3'
miRNA:   3'- -GUGCAAGugCgUGUGCga----CGCC--AGCa -5'
3616 5' -55.7 NC_001650.1 + 22843 0.67 0.915313
Target:  5'- gGCGUaCGCGCcccccGCGCGCUGgGGgCGc -3'
miRNA:   3'- gUGCAaGUGCG-----UGUGCGACgCCaGCa -5'
3616 5' -55.7 NC_001650.1 + 113607 0.68 0.890517
Target:  5'- cCACGUcCGUGUACACGCccgccGCGGUCa- -3'
miRNA:   3'- -GUGCAaGUGCGUGUGCGa----CGCCAGca -5'
3616 5' -55.7 NC_001650.1 + 83232 0.68 0.890517
Target:  5'- gGCGgUCGCGCGCGucgagaagcucUGCgacGCGGUCGc -3'
miRNA:   3'- gUGCaAGUGCGUGU-----------GCGa--CGCCAGCa -5'
3616 5' -55.7 NC_001650.1 + 30674 0.68 0.87678
Target:  5'- gGCGg--ACGCGCGCGCcGCGGggCGa -3'
miRNA:   3'- gUGCaagUGCGUGUGCGaCGCCa-GCa -5'
3616 5' -55.7 NC_001650.1 + 117843 0.69 0.838811
Target:  5'- aCGCGggCAgGCACACGUUGgccaGGUUGc -3'
miRNA:   3'- -GUGCaaGUgCGUGUGCGACg---CCAGCa -5'
3616 5' -55.7 NC_001650.1 + 51310 0.7 0.778207
Target:  5'- gGCGggCACGCGgA-GCUgGCGGUCGa -3'
miRNA:   3'- gUGCaaGUGCGUgUgCGA-CGCCAGCa -5'
3616 5' -55.7 NC_001650.1 + 102648 0.71 0.740593
Target:  5'- gACGggCACGaCGCACgGCUGCagcugggacaGGUCGUa -3'
miRNA:   3'- gUGCaaGUGC-GUGUG-CGACG----------CCAGCA- -5'
3616 5' -55.7 NC_001650.1 + 35670 1.07 0.005395
Target:  5'- aCACGUUCACGCACACGCUGCGGUCGUc -3'
miRNA:   3'- -GUGCAAGUGCGUGUGCGACGCCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.