miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 69023 0.65 0.639602
Target:  5'- cCAUGCUCacgaGCGCCUgguucucguggaagCCCUCGGCCu -3'
miRNA:   3'- -GUGCGAGgaccCGCGGA--------------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 68215 0.66 0.636744
Target:  5'- aGCgGUUCCUGGagugccuguacgaguGCGCCUCCUUCGGg- -3'
miRNA:   3'- gUG-CGAGGACC---------------CGCGGAGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 129110 0.66 0.632933
Target:  5'- cCGCGCuUCCUGaGacaCUCCCCCGcGCCc -3'
miRNA:   3'- -GUGCG-AGGACcCgcgGAGGGGGC-UGG- -5'
3617 3' -64.1 NC_001650.1 + 36026 0.66 0.632933
Target:  5'- --aGUcCCUGGccGCGCC-CCCCUGGCg -3'
miRNA:   3'- gugCGaGGACC--CGCGGaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 28874 0.66 0.623407
Target:  5'- cCACGCagcugUCCcccuUGGGgGUC-CCCCUGACa -3'
miRNA:   3'- -GUGCG-----AGG----ACCCgCGGaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 72994 0.66 0.623407
Target:  5'- gCGCGCUCCUGcgcccccacGCcCCUCuCCCUGAgCa -3'
miRNA:   3'- -GUGCGAGGACc--------CGcGGAG-GGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 8872 0.66 0.622454
Target:  5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3'
miRNA:   3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 175579 0.66 0.622454
Target:  5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3'
miRNA:   3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 94599 0.66 0.613886
Target:  5'- aGCGCgUCCaGGuaGCCcucgUCCCCCGcguCCa -3'
miRNA:   3'- gUGCG-AGGaCCcgCGG----AGGGGGCu--GG- -5'
3617 3' -64.1 NC_001650.1 + 23833 0.66 0.613886
Target:  5'- uGCGcCUUUUGGaaGCUcaCCCCCGACCu -3'
miRNA:   3'- gUGC-GAGGACCcgCGGa-GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 78954 0.66 0.613886
Target:  5'- ---cCUCCUggGGGCGCagaugCCCCgCGGCCc -3'
miRNA:   3'- gugcGAGGA--CCCGCGga---GGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 101012 0.66 0.613886
Target:  5'- uGCGCcgUCCUGGGCGaCUaucacaUCCCgGACg -3'
miRNA:   3'- gUGCG--AGGACCCGCgGA------GGGGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 130511 0.66 0.604376
Target:  5'- -cCGCggccagCCUGGcGUugGCCUCCCCCcGCg -3'
miRNA:   3'- guGCGa-----GGACC-CG--CGGAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 122370 0.66 0.604376
Target:  5'- -uUGC-CCaGGGCGCCgccgucUCCCCCucCCg -3'
miRNA:   3'- guGCGaGGaCCCGCGG------AGGGGGcuGG- -5'
3617 3' -64.1 NC_001650.1 + 157284 0.66 0.604376
Target:  5'- cCAUGCgCCUGGGgGgcaCCUccccgCCCCCGcCCu -3'
miRNA:   3'- -GUGCGaGGACCCgC---GGA-----GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 128580 0.66 0.604376
Target:  5'- aACGCggaCUGGGCccaccgccccGCCgagCCCgUGACCc -3'
miRNA:   3'- gUGCGag-GACCCG----------CGGa--GGGgGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 131333 0.66 0.604376
Target:  5'- gGCGCcagUCUcagGGGCGCCccggagggacUCCCCUcGCCu -3'
miRNA:   3'- gUGCG---AGGa--CCCGCGG----------AGGGGGcUGG- -5'
3617 3' -64.1 NC_001650.1 + 67115 0.66 0.594885
Target:  5'- cCAUGCUCCccGGCcCCaugCuCCCCGGCCc -3'
miRNA:   3'- -GUGCGAGGacCCGcGGa--G-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 59055 0.66 0.594885
Target:  5'- cCGCGgaCgUGGGggcucaucUGCCUCUCCCgGGCCc -3'
miRNA:   3'- -GUGCgaGgACCC--------GCGGAGGGGG-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 125721 0.66 0.594885
Target:  5'- --aGUUCCUaucgcuuGGCGCaCUuucgcCCCCCGACCu -3'
miRNA:   3'- gugCGAGGAc------CCGCG-GA-----GGGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.