miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 28874 0.66 0.623407
Target:  5'- cCACGCagcugUCCcccuUGGGgGUC-CCCCUGACa -3'
miRNA:   3'- -GUGCG-----AGG----ACCCgCGGaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 94599 0.66 0.613886
Target:  5'- aGCGCgUCCaGGuaGCCcucgUCCCCCGcguCCa -3'
miRNA:   3'- gUGCG-AGGaCCcgCGG----AGGGGGCu--GG- -5'
3617 3' -64.1 NC_001650.1 + 78954 0.66 0.613886
Target:  5'- ---cCUCCUggGGGCGCagaugCCCCgCGGCCc -3'
miRNA:   3'- gugcGAGGA--CCCGCGga---GGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 129110 0.66 0.632933
Target:  5'- cCGCGCuUCCUGaGacaCUCCCCCGcGCCc -3'
miRNA:   3'- -GUGCG-AGGACcCgcgGAGGGGGC-UGG- -5'
3617 3' -64.1 NC_001650.1 + 72994 0.66 0.623407
Target:  5'- gCGCGCUCCUGcgcccccacGCcCCUCuCCCUGAgCa -3'
miRNA:   3'- -GUGCGAGGACc--------CGcGGAG-GGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 13687 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 175579 0.66 0.622454
Target:  5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3'
miRNA:   3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 8872 0.66 0.622454
Target:  5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3'
miRNA:   3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 62610 0.66 0.585417
Target:  5'- cCugGg-CCUGGGUuCCUCCCCa-ACCa -3'
miRNA:   3'- -GugCgaGGACCCGcGGAGGGGgcUGG- -5'
3617 3' -64.1 NC_001650.1 + 128389 0.66 0.585417
Target:  5'- cCGCGUUCCUcGcGGCcaccGCCUCCCUCaGCg -3'
miRNA:   3'- -GUGCGAGGA-C-CCG----CGGAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 2251 0.66 0.594885
Target:  5'- aACcCUUCaUGGGUaCCUCCCCCcuGGCCu -3'
miRNA:   3'- gUGcGAGG-ACCCGcGGAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 130511 0.66 0.604376
Target:  5'- -cCGCggccagCCUGGcGUugGCCUCCCCCcGCg -3'
miRNA:   3'- guGCGa-----GGACC-CG--CGGAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 50472 0.66 0.585417
Target:  5'- -cCGCUCCcGGGCGCagagaggcgCCCCUGuCg -3'
miRNA:   3'- guGCGAGGaCCCGCGga-------GGGGGCuGg -5'
3617 3' -64.1 NC_001650.1 + 53676 0.67 0.564699
Target:  5'- uGCGCUCUgauuggccgagaGGGCcaGCCggCUCUCGACCa -3'
miRNA:   3'- gUGCGAGGa-----------CCCG--CGGa-GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 88942 0.67 0.557211
Target:  5'- cCACGCgcgaCUUcGaGG-GCCUCCCgCCGGCCc -3'
miRNA:   3'- -GUGCGa---GGA-C-CCgCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 141175 0.67 0.557211
Target:  5'- gGCGCgaacUCUGGGUGa---CCCCGGCCc -3'
miRNA:   3'- gUGCGa---GGACCCGCggagGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 69138 0.67 0.551614
Target:  5'- gGCuaUCUUGGcccucaggggcgcgaGCGCCUCCagguCCGGCCa -3'
miRNA:   3'- gUGcgAGGACC---------------CGCGGAGGg---GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 132616 0.67 0.529408
Target:  5'- gGCGCUggcccccaaCCUGcaGGCgGCCUCCCCCauccCCa -3'
miRNA:   3'- gUGCGA---------GGAC--CCG-CGGAGGGGGcu--GG- -5'
3617 3' -64.1 NC_001650.1 + 35460 0.67 0.575979
Target:  5'- cCGCGCUCCacaGGCuCCUgCUCCCGuCCc -3'
miRNA:   3'- -GUGCGAGGac-CCGcGGA-GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 66941 0.67 0.575979
Target:  5'- aUAgGCUCCUGcGGCGCCgcgagCUacaacaccguCCUGAUCa -3'
miRNA:   3'- -GUgCGAGGAC-CCGCGGa----GG----------GGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.