miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 119318 0.68 0.48429
Target:  5'- cCGCGCaUCUGGGCauGCCcgUCCCCGuCUa -3'
miRNA:   3'- -GUGCGaGGACCCG--CGGa-GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 48266 0.68 0.511157
Target:  5'- cCACGUUCa-GGGCGCC-CCCCagcagCGAgCa -3'
miRNA:   3'- -GUGCGAGgaCCCGCGGaGGGG-----GCUgG- -5'
3617 3' -64.1 NC_001650.1 + 120192 0.68 0.46676
Target:  5'- -uCGCcCCUGGGCGUcaccuccuugguCUucauacccuagCCCCCGGCCc -3'
miRNA:   3'- guGCGaGGACCCGCG------------GA-----------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 52719 0.68 0.475484
Target:  5'- gACGgUCCaGGGgGCCacgguggcggUCuCCCUGACCa -3'
miRNA:   3'- gUGCgAGGaCCCgCGG----------AG-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 143847 0.68 0.48429
Target:  5'- uCGCGCgUCUUGcGGgGCCUCUCgCGGuCCa -3'
miRNA:   3'- -GUGCG-AGGAC-CCgCGGAGGGgGCU-GG- -5'
3617 3' -64.1 NC_001650.1 + 67073 0.68 0.48429
Target:  5'- -cCGC-CCccGGCGCCUCCCgCGGCg -3'
miRNA:   3'- guGCGaGGacCCGCGGAGGGgGCUGg -5'
3617 3' -64.1 NC_001650.1 + 69479 0.68 0.49139
Target:  5'- uCGCGCUgCUGGGCcaccugaagagcccaGCgCcgccgcucuacucgCCCCCGGCCu -3'
miRNA:   3'- -GUGCGAgGACCCG---------------CG-Ga-------------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 67733 0.68 0.492281
Target:  5'- -cCGCUCg-GGGCauccgucGCCUCCCCCu-CCa -3'
miRNA:   3'- guGCGAGgaCCCG-------CGGAGGGGGcuGG- -5'
3617 3' -64.1 NC_001650.1 + 166983 0.68 0.520251
Target:  5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3'
miRNA:   3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 276 0.68 0.520251
Target:  5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3'
miRNA:   3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 121622 0.68 0.475484
Target:  5'- uCGCGUgcaggugCUUGaGGCGCgaggcggcgCCCCCGGCCg -3'
miRNA:   3'- -GUGCGa------GGAC-CCGCGga-------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 131959 0.68 0.508442
Target:  5'- cCACGUggUCCUGGGCcagcuguggagcacGCUgCCCCCG-CUg -3'
miRNA:   3'- -GUGCG--AGGACCCG--------------CGGaGGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 128734 0.68 0.500333
Target:  5'- uCACGUcCCgcgaggggagggGGGCGCCguguccaggaCCCUGACCg -3'
miRNA:   3'- -GUGCGaGGa-----------CCCGCGGag--------GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 100063 0.68 0.478997
Target:  5'- --aGCUCCaaagugacccccgaGGcGCGCCUCuCCCCGcACCu -3'
miRNA:   3'- gugCGAGGa-------------CC-CGCGGAG-GGGGC-UGG- -5'
3617 3' -64.1 NC_001650.1 + 79093 0.69 0.416253
Target:  5'- cCugGCUCC-GGGCGCggCCgCUCGGCg -3'
miRNA:   3'- -GugCGAGGaCCCGCGgaGG-GGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 124326 0.69 0.42444
Target:  5'- gGCGCgagUCCUccccaacacGGGCGCgaCCCCCGAa- -3'
miRNA:   3'- gUGCG---AGGA---------CCCGCGgaGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 88727 0.69 0.432721
Target:  5'- gGgGCUCCUcGGG-GaagCCCCCGGCCg -3'
miRNA:   3'- gUgCGAGGA-CCCgCggaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 89895 0.69 0.432721
Target:  5'- gACGCggcCCUGa--GCCUCaCCCUGACCg -3'
miRNA:   3'- gUGCGa--GGACccgCGGAG-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 68671 0.69 0.416253
Target:  5'- --aGCUgucugCCaggGGGCGCCgucucUCCCCCGGCUc -3'
miRNA:   3'- gugCGA-----GGa--CCCGCGG-----AGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 34662 0.69 0.449563
Target:  5'- --gGCUCCUGGGcCGCCcucuccaCCCCGGg- -3'
miRNA:   3'- gugCGAGGACCC-GCGGag-----GGGGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.