Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 117612 | 0.69 | 0.416253 |
Target: 5'- --aGCcCCUGGaCGCCUaugCCCgCCGACCg -3' miRNA: 3'- gugCGaGGACCcGCGGA---GGG-GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 22044 | 0.69 | 0.41544 |
Target: 5'- cCGCGaggaUCUUGGGgaugggggugguCGCCUCCCCCuccccggGGCCu -3' miRNA: 3'- -GUGCg---AGGACCC------------GCGGAGGGGG-------CUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 129536 | 0.69 | 0.416253 |
Target: 5'- -cUGCUCCUGGGCcgcguaguCCUUCCUCaGGCCc -3' miRNA: 3'- guGCGAGGACCCGc-------GGAGGGGG-CUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 37461 | 0.69 | 0.42444 |
Target: 5'- aCugGCaUCggGGGCGCaCUCCaCCCG-CCu -3' miRNA: 3'- -GugCG-AGgaCCCGCG-GAGG-GGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 127777 | 0.69 | 0.432721 |
Target: 5'- cCugGC-CCUGGGCggucGCC-CCCCUcGCCc -3' miRNA: 3'- -GugCGaGGACCCG----CGGaGGGGGcUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 34662 | 0.69 | 0.449563 |
Target: 5'- --gGCUCCUGGGcCGCCcucuccaCCCCGGg- -3' miRNA: 3'- gugCGAGGACCC-GCGGag-----GGGGCUgg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 131959 | 0.68 | 0.508442 |
Target: 5'- cCACGUggUCCUGGGCcagcuguggagcacGCUgCCCCCG-CUg -3' miRNA: 3'- -GUGCG--AGGACCCG--------------CGGaGGGGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 119318 | 0.68 | 0.48429 |
Target: 5'- cCGCGCaUCUGGGCauGCCcgUCCCCGuCUa -3' miRNA: 3'- -GUGCGaGGACCCG--CGGa-GGGGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 143847 | 0.68 | 0.48429 |
Target: 5'- uCGCGCgUCUUGcGGgGCCUCUCgCGGuCCa -3' miRNA: 3'- -GUGCG-AGGAC-CCgCGGAGGGgGCU-GG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 121622 | 0.68 | 0.475484 |
Target: 5'- uCGCGUgcaggugCUUGaGGCGCgaggcggcgCCCCCGGCCg -3' miRNA: 3'- -GUGCGa------GGAC-CCGCGga-------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 276 | 0.68 | 0.520251 |
Target: 5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3' miRNA: 3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 133912 | 0.68 | 0.463293 |
Target: 5'- gGCGC-CCagaguacagcuggGGGCGCC-CCCCaGACCc -3' miRNA: 3'- gUGCGaGGa------------CCCGCGGaGGGGgCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 59400 | 0.68 | 0.464158 |
Target: 5'- gCGCGCUgCUGGaGgGCCUcaccaacuacgugaCCCaCCGGCUg -3' miRNA: 3'- -GUGCGAgGACC-CgCGGA--------------GGG-GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 120192 | 0.68 | 0.46676 |
Target: 5'- -uCGCcCCUGGGCGUcaccuccuugguCUucauacccuagCCCCCGGCCc -3' miRNA: 3'- guGCGaGGACCCGCG------------GA-----------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 52719 | 0.68 | 0.475484 |
Target: 5'- gACGgUCCaGGGgGCCacgguggcggUCuCCCUGACCa -3' miRNA: 3'- gUGCgAGGaCCCgCGG----------AG-GGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 24568 | 0.68 | 0.474609 |
Target: 5'- uGCGCaCCgagUGGGaccuccaCGCCUCCCCC-ACCu -3' miRNA: 3'- gUGCGaGG---ACCC-------GCGGAGGGGGcUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 166983 | 0.68 | 0.520251 |
Target: 5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3' miRNA: 3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 108636 | 0.68 | 0.493173 |
Target: 5'- cCugGCcgaccaCCcGGccucGCGCCugUCCCCCGACCu -3' miRNA: 3'- -GugCGa-----GGaCC----CGCGG--AGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 128734 | 0.68 | 0.500333 |
Target: 5'- uCACGUcCCgcgaggggagggGGGCGCCguguccaggaCCCUGACCg -3' miRNA: 3'- -GUGCGaGGa-----------CCCGCGGag--------GGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 100063 | 0.68 | 0.478997 |
Target: 5'- --aGCUCCaaagugacccccgaGGcGCGCCUCuCCCCGcACCu -3' miRNA: 3'- gugCGAGGa-------------CC-CGCGGAG-GGGGC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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