Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 53676 | 0.67 | 0.564699 |
Target: 5'- uGCGCUCUgauuggccgagaGGGCcaGCCggCUCUCGACCa -3' miRNA: 3'- gUGCGAGGa-----------CCCG--CGGa-GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 88942 | 0.67 | 0.557211 |
Target: 5'- cCACGCgcgaCUUcGaGG-GCCUCCCgCCGGCCc -3' miRNA: 3'- -GUGCGa---GGA-C-CCgCGGAGGG-GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 141175 | 0.67 | 0.557211 |
Target: 5'- gGCGCgaacUCUGGGUGa---CCCCGGCCc -3' miRNA: 3'- gUGCGa---GGACCCGCggagGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 88946 | 0.67 | 0.557211 |
Target: 5'- gCGCGaCUUCga-GgGCCUCCCgCCGGCCc -3' miRNA: 3'- -GUGC-GAGGaccCgCGGAGGG-GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 132616 | 0.67 | 0.529408 |
Target: 5'- gGCGCUggcccccaaCCUGcaGGCgGCCUCCCCCauccCCa -3' miRNA: 3'- gUGCGA---------GGAC--CCG-CGGAGGGGGcu--GG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 23869 | 0.67 | 0.575037 |
Target: 5'- gCGCGCUCggucauccuguuuCUGccCGCCUCCCCgGGCa -3' miRNA: 3'- -GUGCGAG-------------GACccGCGGAGGGGgCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 69138 | 0.67 | 0.551614 |
Target: 5'- gGCuaUCUUGGcccucaggggcgcgaGCGCCUCCagguCCGGCCa -3' miRNA: 3'- gUGcgAGGACC---------------CGCGGAGGg---GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 8872 | 0.66 | 0.622454 |
Target: 5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3' miRNA: 3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 72994 | 0.66 | 0.623407 |
Target: 5'- gCGCGCUCCUGcgcccccacGCcCCUCuCCCUGAgCa -3' miRNA: 3'- -GUGCGAGGACc--------CGcGGAG-GGGGCUgG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 129110 | 0.66 | 0.632933 |
Target: 5'- cCGCGCuUCCUGaGacaCUCCCCCGcGCCc -3' miRNA: 3'- -GUGCG-AGGACcCgcgGAGGGGGC-UGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 68215 | 0.66 | 0.636744 |
Target: 5'- aGCgGUUCCUGGagugccuguacgaguGCGCCUCCUUCGGg- -3' miRNA: 3'- gUG-CGAGGACC---------------CGCGGAGGGGGCUgg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 23833 | 0.66 | 0.613886 |
Target: 5'- uGCGcCUUUUGGaaGCUcaCCCCCGACCu -3' miRNA: 3'- gUGC-GAGGACCcgCGGa-GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 175579 | 0.66 | 0.622454 |
Target: 5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3' miRNA: 3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 157284 | 0.66 | 0.604376 |
Target: 5'- cCAUGCgCCUGGGgGgcaCCUccccgCCCCCGcCCu -3' miRNA: 3'- -GUGCGaGGACCCgC---GGA-----GGGGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 35300 | 0.66 | 0.594885 |
Target: 5'- gGCGCgggCCaGGGCcacacGCCUguggCCCUGACCu -3' miRNA: 3'- gUGCGa--GGaCCCG-----CGGAg---GGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 164659 | 0.66 | 0.591095 |
Target: 5'- cCGgGCUCCcGGGgGaCCgcggcgcucaaccCCCCCGACUc -3' miRNA: 3'- -GUgCGAGGaCCCgC-GGa------------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 156453 | 0.66 | 0.591095 |
Target: 5'- gGCGUgagCCUGGGgGCagaaguguccaCCCUGGCCu -3' miRNA: 3'- gUGCGa--GGACCCgCGgag--------GGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 155142 | 0.66 | 0.585417 |
Target: 5'- cCugGCaaaguuccagUCCUGGGC-CCUCCuCCCGu-- -3' miRNA: 3'- -GugCG----------AGGACCCGcGGAGG-GGGCugg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 78954 | 0.66 | 0.613886 |
Target: 5'- ---cCUCCUggGGGCGCagaugCCCCgCGGCCc -3' miRNA: 3'- gugcGAGGA--CCCGCGga---GGGG-GCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 128580 | 0.66 | 0.604376 |
Target: 5'- aACGCggaCUGGGCccaccgccccGCCgagCCCgUGACCc -3' miRNA: 3'- gUGCGag-GACCCG----------CGGa--GGGgGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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