miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 36236 1.09 0.000748
Target:  5'- gCACGCUCCUGGGCGCCUCCCCCGACCc -3'
miRNA:   3'- -GUGCGAGGACCCGCGGAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 125046 0.78 0.127526
Target:  5'- gACGCcgggcgGGGCGCCUCgCCCGGCCa -3'
miRNA:   3'- gUGCGagga--CCCGCGGAGgGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 124580 0.77 0.13709
Target:  5'- -uCGCUCaUGGGCGCgaCCCCCGGCg -3'
miRNA:   3'- guGCGAGgACCCGCGgaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 58159 0.77 0.140421
Target:  5'- cCGCGcCUCCcgcccagcugaGGGUGCCgCCCCCGGCCg -3'
miRNA:   3'- -GUGC-GAGGa----------CCCGCGGaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 43717 0.77 0.150866
Target:  5'- gCugGCUCCUGGcGCcaGCCUCCCUC-ACCc -3'
miRNA:   3'- -GugCGAGGACC-CG--CGGAGGGGGcUGG- -5'
3617 3' -64.1 NC_001650.1 + 136153 0.75 0.186546
Target:  5'- cCAUGCgCCUGaaGGCGCC-CCCCgCGGCCu -3'
miRNA:   3'- -GUGCGaGGAC--CCGCGGaGGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 90305 0.75 0.195426
Target:  5'- aGCGcCUCgUGccagcacacGGCGCCUUCCCCGAUCa -3'
miRNA:   3'- gUGC-GAGgAC---------CCGCGGAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 59973 0.75 0.195426
Target:  5'- aGCGUgUCCgugggGGGCGCCUCgCCCCcgggGGCCa -3'
miRNA:   3'- gUGCG-AGGa----CCCGCGGAG-GGGG----CUGG- -5'
3617 3' -64.1 NC_001650.1 + 50509 0.75 0.199541
Target:  5'- gCGCGCU-UUGGGCGCucgccguCUCCCCCGccGCCg -3'
miRNA:   3'- -GUGCGAgGACCCGCG-------GAGGGGGC--UGG- -5'
3617 3' -64.1 NC_001650.1 + 147792 0.75 0.200003
Target:  5'- aCACGCUCCUGGaGaGCCUgCCgCGACg -3'
miRNA:   3'- -GUGCGAGGACC-CgCGGAgGGgGCUGg -5'
3617 3' -64.1 NC_001650.1 + 71392 0.73 0.240063
Target:  5'- gCGCGCUCCaGGcCGCCUUUCCCGagGCCc -3'
miRNA:   3'- -GUGCGAGGaCCcGCGGAGGGGGC--UGG- -5'
3617 3' -64.1 NC_001650.1 + 26657 0.73 0.267773
Target:  5'- cCACGCUggCCUGGGUGCCcacguucUCCUCCacggGGCCc -3'
miRNA:   3'- -GUGCGA--GGACCCGCGG-------AGGGGG----CUGG- -5'
3617 3' -64.1 NC_001650.1 + 158480 0.72 0.280418
Target:  5'- gCAUGCcCCUGGGCauccagGCCUCCa-CGGCCg -3'
miRNA:   3'- -GUGCGaGGACCCG------CGGAGGggGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 127344 0.72 0.280418
Target:  5'- gCAgGCUCCgGGGCccggugGUCUCCCCUGugUg -3'
miRNA:   3'- -GUgCGAGGaCCCG------CGGAGGGGGCugG- -5'
3617 3' -64.1 NC_001650.1 + 52861 0.72 0.280418
Target:  5'- gCGCGcCUCCUcucguagcaggaGGGCGCgCUCUCCCGAa- -3'
miRNA:   3'- -GUGC-GAGGA------------CCCGCG-GAGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 35506 0.72 0.305807
Target:  5'- gGCGUguggcCCUGGcccGCGCCcgUCCCCGGCCc -3'
miRNA:   3'- gUGCGa----GGACC---CGCGGa-GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 62339 0.72 0.305807
Target:  5'- -gUGCUCCaGGGaacaGCCUCCUCCGAg- -3'
miRNA:   3'- guGCGAGGaCCCg---CGGAGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 59557 0.72 0.312423
Target:  5'- uGCGC-CCUGcGGCGCucCUCCCCCaGCa -3'
miRNA:   3'- gUGCGaGGAC-CCGCG--GAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 52792 0.71 0.319148
Target:  5'- --aGCUCCcGGGCgaaGCCgacgacCCCCCGACUc -3'
miRNA:   3'- gugCGAGGaCCCG---CGGa-----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 80229 0.71 0.33292
Target:  5'- --aGCUCUcGGGUGCCgccuacUCCCCCGcuaGCCa -3'
miRNA:   3'- gugCGAGGaCCCGCGG------AGGGGGC---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.