miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 80903 0.71 0.339969
Target:  5'- -uCGCUCCccGGGU-CCguguagCCCCCGGCCa -3'
miRNA:   3'- guGCGAGGa-CCCGcGGa-----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 133509 0.71 0.339969
Target:  5'- gGCGcCUCCUGGGCagcccCCUCCCCuucucuCGGCg -3'
miRNA:   3'- gUGC-GAGGACCCGc----GGAGGGG------GCUGg -5'
3617 3' -64.1 NC_001650.1 + 165683 0.71 0.339969
Target:  5'- -cCGC-CCcGGGUGCUUCCUCgGGCCg -3'
miRNA:   3'- guGCGaGGaCCCGCGGAGGGGgCUGG- -5'
3617 3' -64.1 NC_001650.1 + 147871 0.71 0.339969
Target:  5'- aGCgGCUCCcGGccGCGCUUCCCaCCGGCUc -3'
miRNA:   3'- gUG-CGAGGaCC--CGCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 142761 0.71 0.346404
Target:  5'- gGCGguCUCCaGGGCGUUUCCCCagggcggCGGCCg -3'
miRNA:   3'- gUGC--GAGGaCCCGCGGAGGGG-------GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 60048 0.71 0.354387
Target:  5'- ----aUCCUGGGCuGCCUgCCCgUGACCa -3'
miRNA:   3'- gugcgAGGACCCG-CGGA-GGGgGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 75294 0.7 0.361756
Target:  5'- gCGCGCgcaaaCCUGGaacaGCGCC-CCCCugCGGCCg -3'
miRNA:   3'- -GUGCGa----GGACC----CGCGGaGGGG--GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 63090 0.7 0.361756
Target:  5'- uCGCGCcCCcGGGUGCUccggagcCCCCUGGCCu -3'
miRNA:   3'- -GUGCGaGGaCCCGCGGa------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 24519 0.7 0.361756
Target:  5'- -cUGCUCCUGcccGGCuGCCccuacCCCCUGGCCg -3'
miRNA:   3'- guGCGAGGAC---CCG-CGGa----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 141872 0.7 0.364734
Target:  5'- cCACGCUCgCUccacacggugacuucGGGCGCgcuCUCCCCCuaGGCUa -3'
miRNA:   3'- -GUGCGAG-GA---------------CCCGCG---GAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 122451 0.7 0.369232
Target:  5'- --aGCUCgUgGGGCaCCUcgCCCCCGGCCu -3'
miRNA:   3'- gugCGAGgA-CCCGcGGA--GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 61089 0.7 0.376812
Target:  5'- gGgGCUCCUGgaGGUGCUggCCUCGGCCa -3'
miRNA:   3'- gUgCGAGGAC--CCGCGGagGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 136841 0.7 0.392284
Target:  5'- -cCGCggagCCUcaGGGCGCCccgacgCCCCCGGgCg -3'
miRNA:   3'- guGCGa---GGA--CCCGCGGa-----GGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 116973 0.7 0.392284
Target:  5'- gCAUGCUCa-GuGCGagUCCCCCGACCg -3'
miRNA:   3'- -GUGCGAGgaCcCGCggAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 22044 0.69 0.41544
Target:  5'- cCGCGaggaUCUUGGGgaugggggugguCGCCUCCCCCuccccggGGCCu -3'
miRNA:   3'- -GUGCg---AGGACCC------------GCGGAGGGGG-------CUGG- -5'
3617 3' -64.1 NC_001650.1 + 79093 0.69 0.416253
Target:  5'- cCugGCUCC-GGGCGCggCCgCUCGGCg -3'
miRNA:   3'- -GugCGAGGaCCCGCGgaGG-GGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 68671 0.69 0.416253
Target:  5'- --aGCUgucugCCaggGGGCGCCgucucUCCCCCGGCUc -3'
miRNA:   3'- gugCGA-----GGa--CCCGCGG-----AGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 117612 0.69 0.416253
Target:  5'- --aGCcCCUGGaCGCCUaugCCCgCCGACCg -3'
miRNA:   3'- gugCGaGGACCcGCGGA---GGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 129536 0.69 0.416253
Target:  5'- -cUGCUCCUGGGCcgcguaguCCUUCCUCaGGCCc -3'
miRNA:   3'- guGCGAGGACCCGc-------GGAGGGGG-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 124326 0.69 0.42444
Target:  5'- gGCGCgagUCCUccccaacacGGGCGCgaCCCCCGAa- -3'
miRNA:   3'- gUGCG---AGGA---------CCCGCGgaGGGGGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.