Results 61 - 80 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 131959 | 0.68 | 0.508442 |
Target: 5'- cCACGUggUCCUGGGCcagcuguggagcacGCUgCCCCCG-CUg -3' miRNA: 3'- -GUGCG--AGGACCCG--------------CGGaGGGGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 48266 | 0.68 | 0.511157 |
Target: 5'- cCACGUUCa-GGGCGCC-CCCCagcagCGAgCa -3' miRNA: 3'- -GUGCGAGgaCCCGCGGaGGGG-----GCUgG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 36643 | 0.68 | 0.520251 |
Target: 5'- gACGUccUCCUucuuGGCGCCcacgcacUCCCCGGCCa -3' miRNA: 3'- gUGCG--AGGAc---CCGCGGa------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 276 | 0.68 | 0.520251 |
Target: 5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3' miRNA: 3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 166983 | 0.68 | 0.520251 |
Target: 5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3' miRNA: 3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 132616 | 0.67 | 0.529408 |
Target: 5'- gGCGCUggcccccaaCCUGcaGGCgGCCUCCCCCauccCCa -3' miRNA: 3'- gUGCGA---------GGAC--CCG-CGGAGGGGGcu--GG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 155267 | 0.67 | 0.537699 |
Target: 5'- gCAgGCaCCUGGGCcugcucuGCgaCCCCuCGGCCg -3' miRNA: 3'- -GUgCGaGGACCCG-------CGgaGGGG-GCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 121750 | 0.67 | 0.538623 |
Target: 5'- -cUGCUCCacuUGGGCGguccgcaggaCCUCCC-UGACCa -3' miRNA: 3'- guGCGAGG---ACCCGC----------GGAGGGgGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 124748 | 0.67 | 0.538623 |
Target: 5'- gGCGCUCCcucGGCGCCgaaCUCGACa -3' miRNA: 3'- gUGCGAGGac-CCGCGGaggGGGCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 130171 | 0.67 | 0.547892 |
Target: 5'- cCGCGC-CaC-GGGCGCCUCCaggggcgugCCCG-CCa -3' miRNA: 3'- -GUGCGaG-GaCCCGCGGAGG---------GGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 134097 | 0.67 | 0.547892 |
Target: 5'- cCGCGgUCCcagGGGCgGCCUCUagaggCGACCg -3' miRNA: 3'- -GUGCgAGGa--CCCG-CGGAGGgg---GCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 69138 | 0.67 | 0.551614 |
Target: 5'- gGCuaUCUUGGcccucaggggcgcgaGCGCCUCCagguCCGGCCa -3' miRNA: 3'- gUGcgAGGACC---------------CGCGGAGGg---GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 88946 | 0.67 | 0.557211 |
Target: 5'- gCGCGaCUUCga-GgGCCUCCCgCCGGCCc -3' miRNA: 3'- -GUGC-GAGGaccCgCGGAGGG-GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 30623 | 0.67 | 0.557211 |
Target: 5'- aGCGcCUCCaGGGCGcCCUCUgCgGGCa -3' miRNA: 3'- gUGC-GAGGaCCCGC-GGAGGgGgCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 88942 | 0.67 | 0.557211 |
Target: 5'- cCACGCgcgaCUUcGaGG-GCCUCCCgCCGGCCc -3' miRNA: 3'- -GUGCGa---GGA-C-CCgCGGAGGG-GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 141175 | 0.67 | 0.557211 |
Target: 5'- gGCGCgaacUCUGGGUGa---CCCCGGCCc -3' miRNA: 3'- gUGCGa---GGACCCGCggagGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 53676 | 0.67 | 0.564699 |
Target: 5'- uGCGCUCUgauuggccgagaGGGCcaGCCggCUCUCGACCa -3' miRNA: 3'- gUGCGAGGa-----------CCCG--CGGa-GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 50253 | 0.67 | 0.566575 |
Target: 5'- uGCGCgacagGGGCGCCUCUCUgCGcCCg -3' miRNA: 3'- gUGCGagga-CCCGCGGAGGGG-GCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 111342 | 0.67 | 0.566575 |
Target: 5'- aGgGC-CCgGGGUugcGCgUCCCCUGACCc -3' miRNA: 3'- gUgCGaGGaCCCG---CGgAGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 132765 | 0.67 | 0.566575 |
Target: 5'- --aGCUCCaccggGGGCGCgUCgCCCGGg- -3' miRNA: 3'- gugCGAGGa----CCCGCGgAGgGGGCUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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