miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 2251 0.66 0.594885
Target:  5'- aACcCUUCaUGGGUaCCUCCCCCcuGGCCu -3'
miRNA:   3'- gUGcGAGG-ACCCGcGGAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 168958 0.66 0.594885
Target:  5'- aACcCUUCaUGGGUaCCUCCCCCcuGGCCu -3'
miRNA:   3'- gUGcGAGG-ACCCGcGGAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 125721 0.66 0.594885
Target:  5'- --aGUUCCUaucgcuuGGCGCaCUuucgcCCCCCGACCu -3'
miRNA:   3'- gugCGAGGAc------CCGCG-GA-----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 164659 0.66 0.591095
Target:  5'- cCGgGCUCCcGGGgGaCCgcggcgcucaaccCCCCCGACUc -3'
miRNA:   3'- -GUgCGAGGaCCCgC-GGa------------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 156453 0.66 0.591095
Target:  5'- gGCGUgagCCUGGGgGCagaaguguccaCCCUGGCCu -3'
miRNA:   3'- gUGCGa--GGACCCgCGgag--------GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 50472 0.66 0.585417
Target:  5'- -cCGCUCCcGGGCGCagagaggcgCCCCUGuCg -3'
miRNA:   3'- guGCGAGGaCCCGCGga-------GGGGGCuGg -5'
3617 3' -64.1 NC_001650.1 + 115011 0.66 0.585417
Target:  5'- -cCGC-CCUGGGCGUgUgcaggaUCCCCGcCCu -3'
miRNA:   3'- guGCGaGGACCCGCGgA------GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 155142 0.66 0.585417
Target:  5'- cCugGCaaaguuccagUCCUGGGC-CCUCCuCCCGu-- -3'
miRNA:   3'- -GugCG----------AGGACCCGcGGAGG-GGGCugg -5'
3617 3' -64.1 NC_001650.1 + 128389 0.66 0.585417
Target:  5'- cCGCGUUCCUcGcGGCcaccGCCUCCCUCaGCg -3'
miRNA:   3'- -GUGCGAGGA-C-CCG----CGGAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 69298 0.66 0.585417
Target:  5'- gACGCUcgccucCCUGuGCGCgCUCCCCUacuGCCg -3'
miRNA:   3'- gUGCGA------GGACcCGCG-GAGGGGGc--UGG- -5'
3617 3' -64.1 NC_001650.1 + 180394 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 13687 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 62610 0.66 0.585417
Target:  5'- cCugGg-CCUGGGUuCCUCCCCa-ACCa -3'
miRNA:   3'- -GugCgaGGACCCGcGGAGGGGgcUGG- -5'
3617 3' -64.1 NC_001650.1 + 69981 0.67 0.575979
Target:  5'- gACGC-CCUGGaCGCCgCCCUgaGGCCc -3'
miRNA:   3'- gUGCGaGGACCcGCGGaGGGGg-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 91105 0.67 0.575979
Target:  5'- cCAUGCUgggCCUGcugagagaaGGCGCUcggagacugggUCCuCCCGGCCg -3'
miRNA:   3'- -GUGCGA---GGAC---------CCGCGG-----------AGG-GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 35460 0.67 0.575979
Target:  5'- cCGCGCUCCacaGGCuCCUgCUCCCGuCCc -3'
miRNA:   3'- -GUGCGAGGac-CCGcGGA-GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 66941 0.67 0.575979
Target:  5'- aUAgGCUCCUGcGGCGCCgcgagCUacaacaccguCCUGAUCa -3'
miRNA:   3'- -GUgCGAGGAC-CCGCGGa----GG----------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 133535 0.67 0.575979
Target:  5'- gAUGCUgCUcGGGCGUC-CCCUCG-CCc -3'
miRNA:   3'- gUGCGAgGA-CCCGCGGaGGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 23869 0.67 0.575037
Target:  5'- gCGCGCUCggucauccuguuuCUGccCGCCUCCCCgGGCa -3'
miRNA:   3'- -GUGCGAG-------------GACccGCGGAGGGGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 111971 0.67 0.570332
Target:  5'- gCAUGCUCCUgagggagguuaagguGGGCaGC--CCCCUGACUa -3'
miRNA:   3'- -GUGCGAGGA---------------CCCG-CGgaGGGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.