miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 111342 0.67 0.566575
Target:  5'- aGgGC-CCgGGGUugcGCgUCCCCUGACCc -3'
miRNA:   3'- gUgCGaGGaCCCG---CGgAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 132765 0.67 0.566575
Target:  5'- --aGCUCCaccggGGGCGCgUCgCCCGGg- -3'
miRNA:   3'- gugCGAGGa----CCCGCGgAGgGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 50253 0.67 0.566575
Target:  5'- uGCGCgacagGGGCGCCUCUCUgCGcCCg -3'
miRNA:   3'- gUGCGagga-CCCGCGGAGGGG-GCuGG- -5'
3617 3' -64.1 NC_001650.1 + 53676 0.67 0.564699
Target:  5'- uGCGCUCUgauuggccgagaGGGCcaGCCggCUCUCGACCa -3'
miRNA:   3'- gUGCGAGGa-----------CCCG--CGGa-GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 88942 0.67 0.557211
Target:  5'- cCACGCgcgaCUUcGaGG-GCCUCCCgCCGGCCc -3'
miRNA:   3'- -GUGCGa---GGA-C-CCgCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 88946 0.67 0.557211
Target:  5'- gCGCGaCUUCga-GgGCCUCCCgCCGGCCc -3'
miRNA:   3'- -GUGC-GAGGaccCgCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 141175 0.67 0.557211
Target:  5'- gGCGCgaacUCUGGGUGa---CCCCGGCCc -3'
miRNA:   3'- gUGCGa---GGACCCGCggagGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 30623 0.67 0.557211
Target:  5'- aGCGcCUCCaGGGCGcCCUCUgCgGGCa -3'
miRNA:   3'- gUGC-GAGGaCCCGC-GGAGGgGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 69138 0.67 0.551614
Target:  5'- gGCuaUCUUGGcccucaggggcgcgaGCGCCUCCagguCCGGCCa -3'
miRNA:   3'- gUGcgAGGACC---------------CGCGGAGGg---GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 134097 0.67 0.547892
Target:  5'- cCGCGgUCCcagGGGCgGCCUCUagaggCGACCg -3'
miRNA:   3'- -GUGCgAGGa--CCCG-CGGAGGgg---GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 130171 0.67 0.547892
Target:  5'- cCGCGC-CaC-GGGCGCCUCCaggggcgugCCCG-CCa -3'
miRNA:   3'- -GUGCGaG-GaCCCGCGGAGG---------GGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 121750 0.67 0.538623
Target:  5'- -cUGCUCCacuUGGGCGguccgcaggaCCUCCC-UGACCa -3'
miRNA:   3'- guGCGAGG---ACCCGC----------GGAGGGgGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 124748 0.67 0.538623
Target:  5'- gGCGCUCCcucGGCGCCgaaCUCGACa -3'
miRNA:   3'- gUGCGAGGac-CCGCGGaggGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 155267 0.67 0.537699
Target:  5'- gCAgGCaCCUGGGCcugcucuGCgaCCCCuCGGCCg -3'
miRNA:   3'- -GUgCGaGGACCCG-------CGgaGGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 132616 0.67 0.529408
Target:  5'- gGCGCUggcccccaaCCUGcaGGCgGCCUCCCCCauccCCa -3'
miRNA:   3'- gUGCGA---------GGAC--CCG-CGGAGGGGGcu--GG- -5'
3617 3' -64.1 NC_001650.1 + 276 0.68 0.520251
Target:  5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3'
miRNA:   3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 36643 0.68 0.520251
Target:  5'- gACGUccUCCUucuuGGCGCCcacgcacUCCCCGGCCa -3'
miRNA:   3'- gUGCG--AGGAc---CCGCGGa------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 166983 0.68 0.520251
Target:  5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3'
miRNA:   3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 48266 0.68 0.511157
Target:  5'- cCACGUUCa-GGGCGCC-CCCCagcagCGAgCa -3'
miRNA:   3'- -GUGCGAGgaCCCGCGGaGGGG-----GCUgG- -5'
3617 3' -64.1 NC_001650.1 + 131959 0.68 0.508442
Target:  5'- cCACGUggUCCUGGGCcagcuguggagcacGCUgCCCCCG-CUg -3'
miRNA:   3'- -GUGCG--AGGACCCG--------------CGGaGGGGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.