Results 101 - 120 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 80229 | 0.71 | 0.33292 |
Target: 5'- --aGCUCUcGGGUGCCgccuacUCCCCCGcuaGCCa -3' miRNA: 3'- gugCGAGGaCCCGCGG------AGGGGGC---UGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 52792 | 0.71 | 0.319148 |
Target: 5'- --aGCUCCcGGGCgaaGCCgacgacCCCCCGACUc -3' miRNA: 3'- gugCGAGGaCCCG---CGGa-----GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 59557 | 0.72 | 0.312423 |
Target: 5'- uGCGC-CCUGcGGCGCucCUCCCCCaGCa -3' miRNA: 3'- gUGCGaGGAC-CCGCG--GAGGGGGcUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 62339 | 0.72 | 0.305807 |
Target: 5'- -gUGCUCCaGGGaacaGCCUCCUCCGAg- -3' miRNA: 3'- guGCGAGGaCCCg---CGGAGGGGGCUgg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 35506 | 0.72 | 0.305807 |
Target: 5'- gGCGUguggcCCUGGcccGCGCCcgUCCCCGGCCc -3' miRNA: 3'- gUGCGa----GGACC---CGCGGa-GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 158480 | 0.72 | 0.280418 |
Target: 5'- gCAUGCcCCUGGGCauccagGCCUCCa-CGGCCg -3' miRNA: 3'- -GUGCGaGGACCCG------CGGAGGggGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 127344 | 0.72 | 0.280418 |
Target: 5'- gCAgGCUCCgGGGCccggugGUCUCCCCUGugUg -3' miRNA: 3'- -GUgCGAGGaCCCG------CGGAGGGGGCugG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 52861 | 0.72 | 0.280418 |
Target: 5'- gCGCGcCUCCUcucguagcaggaGGGCGCgCUCUCCCGAa- -3' miRNA: 3'- -GUGC-GAGGA------------CCCGCG-GAGGGGGCUgg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 26657 | 0.73 | 0.267773 |
Target: 5'- cCACGCUggCCUGGGUGCCcacguucUCCUCCacggGGCCc -3' miRNA: 3'- -GUGCGA--GGACCCGCGG-------AGGGGG----CUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 71392 | 0.73 | 0.240063 |
Target: 5'- gCGCGCUCCaGGcCGCCUUUCCCGagGCCc -3' miRNA: 3'- -GUGCGAGGaCCcGCGGAGGGGGC--UGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 147792 | 0.75 | 0.200003 |
Target: 5'- aCACGCUCCUGGaGaGCCUgCCgCGACg -3' miRNA: 3'- -GUGCGAGGACC-CgCGGAgGGgGCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 50509 | 0.75 | 0.199541 |
Target: 5'- gCGCGCU-UUGGGCGCucgccguCUCCCCCGccGCCg -3' miRNA: 3'- -GUGCGAgGACCCGCG-------GAGGGGGC--UGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 59973 | 0.75 | 0.195426 |
Target: 5'- aGCGUgUCCgugggGGGCGCCUCgCCCCcgggGGCCa -3' miRNA: 3'- gUGCG-AGGa----CCCGCGGAG-GGGG----CUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 90305 | 0.75 | 0.195426 |
Target: 5'- aGCGcCUCgUGccagcacacGGCGCCUUCCCCGAUCa -3' miRNA: 3'- gUGC-GAGgAC---------CCGCGGAGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 136153 | 0.75 | 0.186546 |
Target: 5'- cCAUGCgCCUGaaGGCGCC-CCCCgCGGCCu -3' miRNA: 3'- -GUGCGaGGAC--CCGCGGaGGGG-GCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 43717 | 0.77 | 0.150866 |
Target: 5'- gCugGCUCCUGGcGCcaGCCUCCCUC-ACCc -3' miRNA: 3'- -GugCGAGGACC-CG--CGGAGGGGGcUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 58159 | 0.77 | 0.140421 |
Target: 5'- cCGCGcCUCCcgcccagcugaGGGUGCCgCCCCCGGCCg -3' miRNA: 3'- -GUGC-GAGGa----------CCCGCGGaGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 124580 | 0.77 | 0.13709 |
Target: 5'- -uCGCUCaUGGGCGCgaCCCCCGGCg -3' miRNA: 3'- guGCGAGgACCCGCGgaGGGGGCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 125046 | 0.78 | 0.127526 |
Target: 5'- gACGCcgggcgGGGCGCCUCgCCCGGCCa -3' miRNA: 3'- gUGCGagga--CCCGCGGAGgGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 36236 | 1.09 | 0.000748 |
Target: 5'- gCACGCUCCUGGGCGCCUCCCCCGACCc -3' miRNA: 3'- -GUGCGAGGACCCGCGGAGGGGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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