miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 276 0.68 0.520251
Target:  5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3'
miRNA:   3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 2251 0.66 0.594885
Target:  5'- aACcCUUCaUGGGUaCCUCCCCCcuGGCCu -3'
miRNA:   3'- gUGcGAGG-ACCCGcGGAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 8872 0.66 0.622454
Target:  5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3'
miRNA:   3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 13687 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 22044 0.69 0.41544
Target:  5'- cCGCGaggaUCUUGGGgaugggggugguCGCCUCCCCCuccccggGGCCu -3'
miRNA:   3'- -GUGCg---AGGACCC------------GCGGAGGGGG-------CUGG- -5'
3617 3' -64.1 NC_001650.1 + 23833 0.66 0.613886
Target:  5'- uGCGcCUUUUGGaaGCUcaCCCCCGACCu -3'
miRNA:   3'- gUGC-GAGGACCcgCGGa-GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 23869 0.67 0.575037
Target:  5'- gCGCGCUCggucauccuguuuCUGccCGCCUCCCCgGGCa -3'
miRNA:   3'- -GUGCGAG-------------GACccGCGGAGGGGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 24519 0.7 0.361756
Target:  5'- -cUGCUCCUGcccGGCuGCCccuacCCCCUGGCCg -3'
miRNA:   3'- guGCGAGGAC---CCG-CGGa----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 24568 0.68 0.474609
Target:  5'- uGCGCaCCgagUGGGaccuccaCGCCUCCCCC-ACCu -3'
miRNA:   3'- gUGCGaGG---ACCC-------GCGGAGGGGGcUGG- -5'
3617 3' -64.1 NC_001650.1 + 26657 0.73 0.267773
Target:  5'- cCACGCUggCCUGGGUGCCcacguucUCCUCCacggGGCCc -3'
miRNA:   3'- -GUGCGA--GGACCCGCGG-------AGGGGG----CUGG- -5'
3617 3' -64.1 NC_001650.1 + 27018 0.69 0.42444
Target:  5'- gGCcaaCUCgaagGGGCGCgcggCUCCCCCGGCCc -3'
miRNA:   3'- gUGc--GAGga--CCCGCG----GAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 28874 0.66 0.623407
Target:  5'- cCACGCagcugUCCcccuUGGGgGUC-CCCCUGACa -3'
miRNA:   3'- -GUGCG-----AGG----ACCCgCGGaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 30623 0.67 0.557211
Target:  5'- aGCGcCUCCaGGGCGcCCUCUgCgGGCa -3'
miRNA:   3'- gUGC-GAGGaCCCGC-GGAGGgGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 34662 0.69 0.449563
Target:  5'- --gGCUCCUGGGcCGCCcucuccaCCCCGGg- -3'
miRNA:   3'- gugCGAGGACCC-GCGGag-----GGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 35300 0.66 0.594885
Target:  5'- gGCGCgggCCaGGGCcacacGCCUguggCCCUGACCu -3'
miRNA:   3'- gUGCGa--GGaCCCG-----CGGAg---GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 35460 0.67 0.575979
Target:  5'- cCGCGCUCCacaGGCuCCUgCUCCCGuCCc -3'
miRNA:   3'- -GUGCGAGGac-CCGcGGA-GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 35506 0.72 0.305807
Target:  5'- gGCGUguggcCCUGGcccGCGCCcgUCCCCGGCCc -3'
miRNA:   3'- gUGCGa----GGACC---CGCGGa-GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 36026 0.66 0.632933
Target:  5'- --aGUcCCUGGccGCGCC-CCCCUGGCg -3'
miRNA:   3'- gugCGaGGACC--CGCGGaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 36236 1.09 0.000748
Target:  5'- gCACGCUCCUGGGCGCCUCCCCCGACCc -3'
miRNA:   3'- -GUGCGAGGACCCGCGGAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 36643 0.68 0.520251
Target:  5'- gACGUccUCCUucuuGGCGCCcacgcacUCCCCGGCCa -3'
miRNA:   3'- gUGCG--AGGAc---CCGCGGa------GGGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.