miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 37461 0.69 0.42444
Target:  5'- aCugGCaUCggGGGCGCaCUCCaCCCG-CCu -3'
miRNA:   3'- -GugCG-AGgaCCCGCG-GAGG-GGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 43717 0.77 0.150866
Target:  5'- gCugGCUCCUGGcGCcaGCCUCCCUC-ACCc -3'
miRNA:   3'- -GugCGAGGACC-CG--CGGAGGGGGcUGG- -5'
3617 3' -64.1 NC_001650.1 + 48266 0.68 0.511157
Target:  5'- cCACGUUCa-GGGCGCC-CCCCagcagCGAgCa -3'
miRNA:   3'- -GUGCGAGgaCCCGCGGaGGGG-----GCUgG- -5'
3617 3' -64.1 NC_001650.1 + 50253 0.67 0.566575
Target:  5'- uGCGCgacagGGGCGCCUCUCUgCGcCCg -3'
miRNA:   3'- gUGCGagga-CCCGCGGAGGGG-GCuGG- -5'
3617 3' -64.1 NC_001650.1 + 50472 0.66 0.585417
Target:  5'- -cCGCUCCcGGGCGCagagaggcgCCCCUGuCg -3'
miRNA:   3'- guGCGAGGaCCCGCGga-------GGGGGCuGg -5'
3617 3' -64.1 NC_001650.1 + 50509 0.75 0.199541
Target:  5'- gCGCGCU-UUGGGCGCucgccguCUCCCCCGccGCCg -3'
miRNA:   3'- -GUGCGAgGACCCGCG-------GAGGGGGC--UGG- -5'
3617 3' -64.1 NC_001650.1 + 52719 0.68 0.475484
Target:  5'- gACGgUCCaGGGgGCCacgguggcggUCuCCCUGACCa -3'
miRNA:   3'- gUGCgAGGaCCCgCGG----------AG-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 52792 0.71 0.319148
Target:  5'- --aGCUCCcGGGCgaaGCCgacgacCCCCCGACUc -3'
miRNA:   3'- gugCGAGGaCCCG---CGGa-----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 52861 0.72 0.280418
Target:  5'- gCGCGcCUCCUcucguagcaggaGGGCGCgCUCUCCCGAa- -3'
miRNA:   3'- -GUGC-GAGGA------------CCCGCG-GAGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 53676 0.67 0.564699
Target:  5'- uGCGCUCUgauuggccgagaGGGCcaGCCggCUCUCGACCa -3'
miRNA:   3'- gUGCGAGGa-----------CCCG--CGGa-GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 58159 0.77 0.140421
Target:  5'- cCGCGcCUCCcgcccagcugaGGGUGCCgCCCCCGGCCg -3'
miRNA:   3'- -GUGC-GAGGa----------CCCGCGGaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 59055 0.66 0.594885
Target:  5'- cCGCGgaCgUGGGggcucaucUGCCUCUCCCgGGCCc -3'
miRNA:   3'- -GUGCgaGgACCC--------GCGGAGGGGG-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 59400 0.68 0.464158
Target:  5'- gCGCGCUgCUGGaGgGCCUcaccaacuacgugaCCCaCCGGCUg -3'
miRNA:   3'- -GUGCGAgGACC-CgCGGA--------------GGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 59557 0.72 0.312423
Target:  5'- uGCGC-CCUGcGGCGCucCUCCCCCaGCa -3'
miRNA:   3'- gUGCGaGGAC-CCGCG--GAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 59973 0.75 0.195426
Target:  5'- aGCGUgUCCgugggGGGCGCCUCgCCCCcgggGGCCa -3'
miRNA:   3'- gUGCG-AGGa----CCCGCGGAG-GGGG----CUGG- -5'
3617 3' -64.1 NC_001650.1 + 60048 0.71 0.354387
Target:  5'- ----aUCCUGGGCuGCCUgCCCgUGACCa -3'
miRNA:   3'- gugcgAGGACCCG-CGGA-GGGgGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 61089 0.7 0.376812
Target:  5'- gGgGCUCCUGgaGGUGCUggCCUCGGCCa -3'
miRNA:   3'- gUgCGAGGAC--CCGCGGagGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 62339 0.72 0.305807
Target:  5'- -gUGCUCCaGGGaacaGCCUCCUCCGAg- -3'
miRNA:   3'- guGCGAGGaCCCg---CGGAGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 62610 0.66 0.585417
Target:  5'- cCugGg-CCUGGGUuCCUCCCCa-ACCa -3'
miRNA:   3'- -GugCgaGGACCCGcGGAGGGGgcUGG- -5'
3617 3' -64.1 NC_001650.1 + 63090 0.7 0.361756
Target:  5'- uCGCGCcCCcGGGUGCUccggagcCCCCUGGCCu -3'
miRNA:   3'- -GUGCGaGGaCCCGCGGa------GGGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.