miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 88946 0.67 0.557211
Target:  5'- gCGCGaCUUCga-GgGCCUCCCgCCGGCCc -3'
miRNA:   3'- -GUGC-GAGGaccCgCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 89895 0.69 0.432721
Target:  5'- gACGCggcCCUGa--GCCUCaCCCUGACCg -3'
miRNA:   3'- gUGCGa--GGACccgCGGAG-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 90305 0.75 0.195426
Target:  5'- aGCGcCUCgUGccagcacacGGCGCCUUCCCCGAUCa -3'
miRNA:   3'- gUGC-GAGgAC---------CCGCGGAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 91105 0.67 0.575979
Target:  5'- cCAUGCUgggCCUGcugagagaaGGCGCUcggagacugggUCCuCCCGGCCg -3'
miRNA:   3'- -GUGCGA---GGAC---------CCGCGG-----------AGG-GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 94599 0.66 0.613886
Target:  5'- aGCGCgUCCaGGuaGCCcucgUCCCCCGcguCCa -3'
miRNA:   3'- gUGCG-AGGaCCcgCGG----AGGGGGCu--GG- -5'
3617 3' -64.1 NC_001650.1 + 100063 0.68 0.478997
Target:  5'- --aGCUCCaaagugacccccgaGGcGCGCCUCuCCCCGcACCu -3'
miRNA:   3'- gugCGAGGa-------------CC-CGCGGAG-GGGGC-UGG- -5'
3617 3' -64.1 NC_001650.1 + 101012 0.66 0.613886
Target:  5'- uGCGCcgUCCUGGGCGaCUaucacaUCCCgGACg -3'
miRNA:   3'- gUGCG--AGGACCCGCgGA------GGGGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 108636 0.68 0.493173
Target:  5'- cCugGCcgaccaCCcGGccucGCGCCugUCCCCCGACCu -3'
miRNA:   3'- -GugCGa-----GGaCC----CGCGG--AGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 111342 0.67 0.566575
Target:  5'- aGgGC-CCgGGGUugcGCgUCCCCUGACCc -3'
miRNA:   3'- gUgCGaGGaCCCG---CGgAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 111971 0.67 0.570332
Target:  5'- gCAUGCUCCUgagggagguuaagguGGGCaGC--CCCCUGACUa -3'
miRNA:   3'- -GUGCGAGGA---------------CCCG-CGgaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 115011 0.66 0.585417
Target:  5'- -cCGC-CCUGGGCGUgUgcaggaUCCCCGcCCu -3'
miRNA:   3'- guGCGaGGACCCGCGgA------GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 116973 0.7 0.392284
Target:  5'- gCAUGCUCa-GuGCGagUCCCCCGACCg -3'
miRNA:   3'- -GUGCGAGgaCcCGCggAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 117612 0.69 0.416253
Target:  5'- --aGCcCCUGGaCGCCUaugCCCgCCGACCg -3'
miRNA:   3'- gugCGaGGACCcGCGGA---GGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 119318 0.68 0.48429
Target:  5'- cCGCGCaUCUGGGCauGCCcgUCCCCGuCUa -3'
miRNA:   3'- -GUGCGaGGACCCG--CGGa-GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 120192 0.68 0.46676
Target:  5'- -uCGCcCCUGGGCGUcaccuccuugguCUucauacccuagCCCCCGGCCc -3'
miRNA:   3'- guGCGaGGACCCGCG------------GA-----------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 121622 0.68 0.475484
Target:  5'- uCGCGUgcaggugCUUGaGGCGCgaggcggcgCCCCCGGCCg -3'
miRNA:   3'- -GUGCGa------GGAC-CCGCGga-------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 121750 0.67 0.538623
Target:  5'- -cUGCUCCacuUGGGCGguccgcaggaCCUCCC-UGACCa -3'
miRNA:   3'- guGCGAGG---ACCCGC----------GGAGGGgGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 122370 0.66 0.604376
Target:  5'- -uUGC-CCaGGGCGCCgccgucUCCCCCucCCg -3'
miRNA:   3'- guGCGaGGaCCCGCGG------AGGGGGcuGG- -5'
3617 3' -64.1 NC_001650.1 + 122451 0.7 0.369232
Target:  5'- --aGCUCgUgGGGCaCCUcgCCCCCGGCCu -3'
miRNA:   3'- gugCGAGgA-CCCGcGGA--GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 124326 0.69 0.42444
Target:  5'- gGCGCgagUCCUccccaacacGGGCGCgaCCCCCGAa- -3'
miRNA:   3'- gUGCG---AGGA---------CCCGCGgaGGGGGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.